Remote estimation of crop and grass chlorophyll and nitrogen content using red-edge bands on Sentinel-2 and -3

Sentinel-2 is planned for launch in 2014 by the European Space Agency and it is equipped with the Multi Spectral Instrument (MSI), which will provide images with high spatial, spectral and temporal resolution. It covers the VNIR/SWIR spectral region in 13 bands and incorporates two new spectral bands in the red-edge region, which can be used to derive vegetation indices using red-edge bands in their formulation. These are particularly suitable for estimating canopy chlorophyll and nitrogen (N) content. This band setting is important for vegetation studies and is very similar to the ones of the Ocean and Land Colour Instrument (OLCI) on the planned Sentinel-3 satellite and the Medium Resolution Imaging Spectrometer (MERIS) on Envisat, which operated from 2002 to early 2012. This paper focuses on the potential of Sentinel-2 and Sentinel-3 in estimating total crop and grass chlorophyll and N content by studying in situ crop variables and spectroradiometer measurements obtained for four different test sites. In particular, the red-edge chlorophyll index (CI_red-edge), the green chlorophyll index (CI_green) and the MERIS terrestrial chlorophyll index (MTCI) were found to be accurate and linear estimators of canopy chlorophyll and N content and the Sentinel-2 and -3 bands are well positioned for deriving these indices. Results confirm the importance of the red-edge bands on particularly Sentinel-2 for agricultural applications, because of the combination with its high spatial resolution of 20 m.     

Above Ground Forest Phytomass Assessment in Southern Gujarat

Spectral modeling of above ground biomass (AGB) with field data collected in 48 field sites representing moist deciduous forest in Surat district is reported. Models were generated using LISS-III and MODIS data. The plot-wise field data was aggregated to MODIS pixel (250 m) using area weightages of forest/vegetation. The study reports that above ground phytomass varied from 6.13 t/ha to 389.166 t/ha while AGB phytomass estimated using area-weights for sites of 250×250 m, ranged from 5.534 t/ha to 134.082 t/ha. The contribution of bamboo in AGB has been found very high. The analysis indicated that the highest correlation between AGB phytomass and red band (R) of MODIS satellite data of October was (R²=0.7823) and R²=0.6998 with both NDVI of October data as well as NDVI_max. High correlation (R²=0.402) with IR band of February month was also found. The phytomass range obtained by using MODIS data varies from 0.147 t/ha to 182.16 t/ha. The mean biomass is 40.50 t/ha. Total biomass is 31.44 Mt. The mean Carbon density is 19.44 tC/ha in forest areas. The study is validation of region-wise spectral modeling approach that will be adopted for mapping vegetation carbon pool of the India under National Carbon Project of ISRO-Geosphere Biosphere Programme.     

Comparative analysis of different uni- and multi-variate methods for estimation of vegetation water content using hyper-spectral measurements

Assessment of vegetation water content is critical for monitoring vegetation condition, detecting plant water stress, assessing the risk of forest fires and evaluating water status for irrigation. The main objective of this study was to investigate the performance of various mono- and multi-variate statistical methods for estimating vegetation water content (VWC) from hyper-spectral data. Hyper-spectral data is influenced by multi-collinearity because of a large number of (independent) spectral bands being modeled by a small number of (dependent) biophysical variables. Therefore, some full spectrum methods that are known to be suitable for analyzing multi-collinear data set were chosen. Canopy spectral reflectance was obtained with a GER 3700 spectro-radiometer (400–2400 nm) in a laboratory setting and VWC was measured by calculating wet/dry weight difference per unit of ground area (g/m²) of each plant canopy (n = 95). Three multivariate statistical methods were applied to estimate VWC: (1) partial least square regression, (2) artificial neural network and (3) principal component regression. They were selected to minimize the problem related to multi-collinearity. For comparison, uni-variate techniques including narrow band ratio water index (RWI), normalized difference water index (NDWI), second soil adjusted vegetation index (SAVI2) and transferred soil adjusted vegetation index (TSAVI) were applied. For each type of vegetation index, all two-band combinations were evaluated to determine the best band combination. Validation of the methods was based on the cross validation procedure and using three statistical indicators: R², RMSE and relative RMSE. The cross-validated results identified PLSR as the regression model providing the most accurate estimates of VWC among the various methods. The result revealed that this model is highly recommended for use with multi-collinear datasets ($R_{\text{CV}}^2=0.94$, RRMSE_CV = 0.23). Principal component regression exhibited the lowest accuracy among the multivariate models ($R_{\text{CV}}^2=0.78$, RRMSE_CV = 0.41).     

Deriving leaf mass per area (LMA) from foliar reflectance across a variety of plant species using continuous wavelet analysis

Leaf mass per area (LMA), the ratio of leaf dry mass to leaf area, is a trait of central importance to the understanding of plant light capture and carbon gain. It can be estimated from leaf reflectance spectroscopy in the infrared region, by making use of information about the absorption features of dry matter. This study reports on the application of continuous wavelet analysis (CWA) to the estimation of LMA across a wide range of plant species. We compiled a large database of leaf reflectance spectra acquired within the framework of three independent measurement campaigns (ANGERS, LOPEX and PANAMA) and generated a simulated database using the PROSPECT leaf optical properties model. CWA was applied to the measured and simulated databases to extract wavelet features that correlate with LMA. These features were assessed in terms of predictive capability and robustness while transferring predictive models from the simulated database to the measured database. The assessment was also conducted with two existing spectral indices, namely the Normalized Dry Matter Index (NDMI) and the Normalized Difference index for LMA (ND_LMA).Five common wavelet features were determined from the two databases, which showed significant correlations with LMA (R²: 0.51–0.82, p < 0.0001). The best robustness (R² = 0.74, RMSE = 18.97 g/m² and Bias = 0.12 g/m²) was obtained using a combination of two low-scale features (1639 nm, scale 4) and (2133 nm, scale 5), the first being predominantly important. The transferability of the wavelet-based predictive model to the whole measured database was either better than or comparable to those based on spectral indices. Additionally, only the wavelet-based model showed consistent predictive capabilities among the three measured data sets. In comparison, the models based on spectral indices were sensitive to site-specific data sets. Integrating the ND_LMA spectral index and the two robust wavelet features improved the LMA prediction. One of the bands used by this spectral index, 1368 nm, was located in a strong atmospheric water absorption region and replacing it with the next available band (1340 nm) led to lower predictive accuracies. However, the two wavelet features were not affected by data quality in the atmospheric absorption regions and therefore showed potential for canopy-level investigations. The wavelet approach provides a different perspective into spectral responses to LMA variation than the traditional spectral indices and holds greater promise for implementation with airborne or spaceborne imaging spectroscopy data for mapping canopy foliar dry biomass.     

Moving from plot-based to hillslope-scale assessments of savanna vegetation structure with long-range terrestrial laser scanning (LR-TLS)

Reliable quantification of savanna vegetation structure is critical for accurate carbon accounting and biodiversity assessment under changing climate and land-use conditions. Inventories of fine-scale vegetation structural attributes are typically conducted from field-based plots or transects, while large-area monitoring relies on a combination of airborne and satellite remote sensing. Both of these approaches have their strengths and limitations, but terrestrial laser scanning (TLS) has emerged as the benchmark for vegetation structural parameterization – recording and quantifying 3D structural detail that is not possible from manual field-based or airborne/spaceborne methods. However, traditional TLS approaches suffer from similar spatial constraints as field-based inventories. Given their small areal coverage, standard TLS plots may fail to capture the heterogeneity of landscapes in which they are embedded. Here we test the potential of long-range (>2000 m) terrestrial laser scanning (LR-TLS) to provide rapid and robust assessment of savanna vegetation 3D structure at hillslope scales. We used LR-TLS to sample entire savanna hillslopes from topographic vantage points and collected coincident plot-scale (1 ha) TLS scans at increasing distances from the LR-TLS station. We merged multiple TLS scans at the plot scale to provide the reference structure, and evaluated how 3D metrics derived from LR-TLS deviated from this baseline with increasing distance. Our results show that despite diluted point density and increased beam divergence with distance, LR-TLS can reliably characterize tree height (RMSE = 0.25–1.45 m) and canopy cover (RMSE = 5.67–15.91%) at distances of up to 500 m in open savanna woodlands. When aggregated to the same sampling grain as leading spaceborne vegetation products (10–30 m), our findings show potential for LR-TLS to play a key role in constraining satellite-based structural estimates in savannas over larger areas than traditional TLS sampling can provide.     

Discriminating lava flows of different age within Nyamuragira’s volcanic field using spectral mixture analysis

In this study, linear spectral mixture analysis (LSMA) is used to characterize the spectral heterogeneity of lava flows from Nyamuragira volcano, Democratic Republic of Congo, where vegetation and lava are the two main land covers. In order to estimate fractions of vegetation and lava through satellite remote sensing, we made use of 30 m resolution Landsat Enhanced Thematic Mapper Plus (ETM+) and Advanced Land Imager (ALI) imagery. 2 m Pleiades data was used for validation. From the results, we conclude that (1) LSMA is capable of characterizing volcanic fields and discriminating between different types of lava surfaces; (2) three lava endmembers can be identified as lava of old, intermediate and young age, corresponding to different stages in lichen growth and chemical weathering; (3) a strong relationship is observed between vegetation fraction and lava age, where vegetation at Nyamuragira starts to significantly colonize lava flows ∼15 years after eruption and occupies over 50% of the lava surfaces ∼40 years after eruption. Our study demonstrates the capability of spectral unmixing to characterize lava surfaces and vegetation colonization over time, which is particularly useful for poorly known volcanoes or those not accessible for physical or political reasons.     

Hyperspectral imagery for disaggregation of land surface temperature with selected regression algorithms over different land use land cover scenes

Land surface temperature (LST), a key parameter in understanding thermal behavior of various terrestrial processes, changes rapidly and hence mapping and modeling its spatio-temporal evolution requires measurements at frequent intervals and finer resolutions. We designed a series of experiments for disaggregation of LST (DLST) derived from the Landsat ETM + thermal band using narrowband reflectance information derived from the EO1-Hyperion hyperspectral sensor and selected regression algorithms over three geographic locations with different climate and land use land cover (LULC) characteristics. The regression algorithms applied to this end were: partial least square regression (PLS), gradient boosting machine (GBM) and support vector machine (SVM). To understand the scale dependence of regression algorithms for predicting LST, we developed individual models (local models) at four spatial resolutions (480 m, 240 m, 120 m and 60 m) and tested the differences between these using RMSE derived from cross-validated samples. The sharpening capabilities of the models were assessed by predicting LST at finer resolutions using models developed at coarser spatial resolution. The results were also compared with LST produced by DisTrad sharpening model. It was found that scale dependence of the models is a function of the study area characteristics and regression algorithms. Considering the sharpening experiments, both GBM and SVM performed better than PLS which produced noisy LST at finer spatial resolutions. Based on the results, it can be concluded that GBM and SVM are more suitable algorithms for operational implementation of this application. These algorithms outperformed DisTrad model for heterogeneous landscapes with high variation in soil moisture content and photosynthetic activities. The variable importance measure derived from PLS and GBM provided insights about the characteristics of the relevant bands. The results indicate that wavelengths centered around 457, 671, 1488 and 2013–2083 nm are the most important in predicting LST. Nevertheless, further research is needed to improve the performance of regression algorithms when there is a large variability in LST and to examine the utility of narrowband vegetation indices to predict the LST. The benefits of this research may extend to applications such as monitoring urban heat island effect, volcanic activity and wildfire, estimating evapotranspiration and assessing drought severity.     

Estimating soil salinity in Pingluo County of China using QuickBird data and soil reflectance spectra

Soil salinization is a worldwide environmental problem with severe economic and social consequences. In this paper, estimating the soil salinity of Pingluo County, China by a partial least squares regression (PLSR) predictive model was carried out using QuickBird data and soil reflectance spectra. At first, a relationship between the sensitive bands of soil salinity acquired from measured reflectance spectra and the spectral coverage of seven commonly used optical sensors was analyzed. Secondly, the potentiality of QuickBird data in estimating soil salinity by analyzing the correlations between the measured reflectance spectra and reflectance spectra derived from QuickBird data and analyzing the contributions of each band of QuickBird data to soil salinity estimation Finally, a PLSR predictive model of soil salinity was developed using reflectance spectra from QuickBird data and eight spectral indices derived from QuickBird data. The results indicated that the sensitive bands covered several bands of each optical sensor and these sensors can be used for soil salinity estimation. The result of estimation model showed that an accurate prediction of soil salinity can be made based on the PLSR method (R² = 0.992, RMSE = 0.195). The PLSR model's performance was better than that of the stepwise multiple regression (SMR) method. The results also indicated that using spectral indices such as intensity within spectral bands (Int1, Int2), soil salinity indices (SI1, SI2, SI3), the brightness index (BI), the normalized difference vegetation index (NDVI) and the ratio vegetation index (RVI) as independent model variables can help to increase the accuracy of soil salinity mapping. The NDVI and RVI can help to reduce the influences of vegetation cover and soil moisture on prediction accuracy. The method developed in this paper can be applied in other arid and semi-arid areas, such as western China.     

Evaluating a thermal image sharpening model over a mixed agricultural landscape in India

Fine spatial resolution (e.g., <300 m) thermal data are needed regularly to characterise the temporal pattern of surface moisture status, water stress, and to forecast agriculture drought and famine. However, current optical sensors do not provide frequent thermal data at a fine spatial resolution. The TsHARP model provides a possibility to generate fine spatial resolution thermal data from coarse spatial resolution (≥1 km) data on the basis of an anticipated inverse linear relationship between the normalised difference vegetation index (NDVI) at fine spatial resolution and land surface temperature at coarse spatial resolution. The current study utilised the TsHARP model over a mixed agricultural landscape in the northern part of India. Five variants of the model were analysed, including the original model, for their efficiency. Those five variants were the global model (original); the resolution-adjusted global model; the piecewise regression model; the stratified model; and the local model. The models were first evaluated using Advanced Space-borne Thermal Emission Reflection Radiometer (ASTER) thermal data (90 m) aggregated to the following spatial resolutions: 180 m, 270 m, 450 m, 630 m, 810 m and 990 m. Although sharpening was undertaken for spatial resolutions from 990 m to 90 m, root mean square error (RMSE) of <2 K could, on average, be achieved only for 990–270 m in the ASTER data. The RMSE of the sharpened images at 270 m, using ASTER data, from the global, resolution-adjusted global, piecewise regression, stratification and local models were 1.91, 1.89, 1.96, 1.91, 1.70 K, respectively. The global model, resolution-adjusted global model and local model yielded higher accuracy, and were applied to sharpen MODIS thermal data (1 km) to the target spatial resolutions. Aggregated ASTER thermal data were considered as a reference at the respective target spatial resolutions to assess the prediction results from MODIS data. The RMSE of the predicted sharpened image from MODIS using the global, resolution-adjusted global and local models at 250 m were 3.08, 2.92 and 1.98 K, respectively. The local model consistently led to more accurate sharpened predictions by comparison to other variants.     

光谱指数趋势面的城市地表温度降尺度转换

针对城市及周边区域建造区和自然地表交织分布的特点,探讨了利用归一化植被指数(NDVI)和归一化建造指数(NDBI)构造趋势面的地表温度(LST)降尺度方法,以北京市市区及周边较平坦区域为例实现了LST自960 m向120 m的降尺度转换。分析了LST空间分布特征及NDVI、NDBI对地物的指示性特征;以北京市四至六环为界分析NDVI、NDBI趋势面对地表温度的拟合程度及各自的适用区域;在120 m、240 m、480 m和960 m 4个尺度上评价了NDVI、NDBI和NDVI+NDBI趋势面对LST的拟合程度和趋势面转换函数的尺度效应;对NDVI、NDBI和NDVI NDBI等3种方法的降尺度结果分覆盖类型、分区域对比评价。实验结果表明结合两种光谱指数的NDVI NDBI方法降尺度转换精度有所改善,改善程度取决于地表覆盖类型组合。     

Resolution vs. image quality in pre-tsunami imagery used for tsunami impact models in Aceh,Indonesia

Land cover roughness coefficients (LCRs) have been used in multivariate spatial models to test the mitigation potential of coastal vegetation to reduce impacts of the 2004 tsunami in Aceh, Indonesia. Previously, a Landsat 2002 satellite imagery was employed to derive land cover maps, which were then combined with vegetation characteristics, i.e., stand height, stem diameter and planting density to obtain LCRs. The present study tested LCRs extracted from 2003 and 2004 Landsat (30 m) images as well as a combination of 2003 and 2004 higher spatial resolution SPOT (10 m) imagery, while keeping the previous vegetation characteristics. Transects along the coast were used to extract land cover, whenever availability and visibility allowed. These new LCRs applied in previously developed tsunami impact models on wave outreach, casualties and damages confirmed previous findings regarding distance to the shoreline as a main factor reducing tsunami impacts. Nevertheless, the models using the new LCRs did not perform better than the original one. Particularly casualties models using 2002 LCRs performed better (δAIC > 2) than the more recent Landsat and SPOT counterparts. Cloud cover at image acquisition for Landsat and low area coverage for SPOT images decreased statistical predictive power (fewer observations). Due to the large spatial heterogeneity of tsunami characteristics as well as topographic and land-use features, it was more important to cover a larger area. Nevertheless, if more land cover classes would be referenced and high resolution imagery with low cloud cover would be available, the full benefits of higher spatial resolution imagery used to extract more precise land use roughness coefficients could be exploited.     

Species’ habitat use inferred from environmental variables at multiple scales: How much we gain from high-resolution vegetation data?

Spatial resolution of environmental data may influence the results of habitat selection models. As high-resolution data are usually expensive, an assessment of their contribution to the reliability of habitat models is of interest for both researchers and managers. We evaluated how vegetation cover datasets of different spatial resolutions influence the inferences and predictive power of multi-scale habitat selection models for the endangered brown bear populations in the Cantabrian Range (NW Spain). We quantified the relative performance of three types of datasets: (i) coarse resolution data from Corine Land Cover (minimum mapping unit of 25 ha), (ii) medium resolution data from the Forest Map of Spain (minimum mapping unit of 2.25 ha and information on forest canopy cover and tree species present in each polygon), and (iii) high-resolution Lidar data (about 0.5 points/m²) providing a much finer information on forest canopy cover and height. Despite all the models performed well (AUC > 0.80), the predictive ability of multi-scale models significantly increased with spatial resolution, particularly when other predictors of habitat suitability (e.g. human pressure) were not used to indirectly filter out areas with a more degraded vegetation cover. The addition of fine grain information on forest structure (LiDAR) led to a better understanding of landscape use and a more accurate spatial representation of habitat suitability, even for a species with large spatial requirements as the brown bear, which will result in the development of more effective measures to assist endangered species conservation.     

Analyzing fine-scale wetland composition using high resolution imagery and texture features

In order to monitor natural and anthropogenic disturbance effects to wetland ecosystems, it is necessary to employ both accurate and rapid mapping of wet graminoid/sedge communities. Thus, it is desirable to utilize automated classification algorithms so that the monitoring can be done regularly and in an efficient manner. This study developed a classification and accuracy assessment method for wetland mapping of at-risk plant communities in marl prairie and marsh areas of the Everglades National Park. Maximum likelihood (ML) and Support Vector Machine (SVM) classifiers were tested using 30.5 cm aerial imagery, the normalized difference vegetation index (NDVI), first and second order texture features and ancillary data. Additionally, appropriate window sizes for different texture features were estimated using semivariogram analysis. Findings show that the addition of NDVI and texture features increased classification accuracy from 66.2% using the ML classifier (spectral bands only) to 83.71% using the SVM classifier (spectral bands, NDVI and first order texture features).     

Spatial analysis of high-resolution urban thermal patterns in Vojvodina,Serbia

Main objective of this study was to establish a relationship between land cover and land surface temperature (LST) in urban and rural areas. The research was conducted using Landsat, WorldView-2 (WV-2) and Digital Mapping Camera. Normalised difference vegetation index and normalised difference built-up index were used for establishing the relation between built-up area, vegetation cover and LST for spatial resolution of 30 m. Impervious surface and vegetation area generated from Digital Mapping Camera from Intergraph and WV-2 were used to establish the relation between built-up area, vegetation cover and LST for spatial resolutions of 0.1, 0.5 and 30 m. Linear regression models were used to determine the relationship between LST and indicators. Main contribution of this research is to establish the use of combining remote sensing sensors with different spectral and spatial resolution for two typical settlements in Vojvodina. Correlation coefficients between LST and LST indicators ranged from 0.602 to 0.768.     

The ‘Stained Glass Procedure’, a new method to compare classification performance of images acquired with different pixel sizes

Objective comparison of classification performance of earth observation images, acquired at different spatial resolutions (e.g. NOAA-AVHRR, IRS-MOS, IRS-WiFS, Landsat-TM, IRS-LISS), is complicated because both class definition and training site selection are hampered by the inherent scale differences. This paper presents a new, generic method to compare the information content of such a set of images, the “Stained Glass Procedure”. It overcomes the stated problems by computing the scale-dependent, internal spectral variation in an image and by using this as an indicator for land cover information. The Stained Glass Procedure creates segments in the images and calculates the internal spectral variation in a high-spatial-resolution image for each segment. For each image from the set the average variance, weighted to area, is calculated. The Stained Glass Procedure can be used to predict the performance of sensors that are not available, yet, or to roughly determine the optimal spatial resolution for the classification of a specific area.The procedure was applied to images with pixel sizes ranging from 23 to 1100 m. Classification detail of Envisat-MERIS (300 m pixel size), not included in the image set, could be predicted accurately using the Stained Glass Procedure.The Stained Glass Procedure applies one procedure to all images, without any subjective decision during the analysis, thus offering a method to compare images with different pixel sizes in terms of classification detail that is truly objective.     

Assessment of leaf carotenoids content with a new carotenoid index: Development and validation on experimental and model data

Leaf carotenoids content (LCar) is an important indicator of plant physiological status. Accurate estimation of LCar provides valuable insight into early detection of stress in vegetation. With spectroscopy techniques, a semi-empirical approach based on spectral indices was extensively used for carotenoids content estimation. However, established spectral indices for carotenoids that generally rely on limited measured data, might lack predictive accuracy for carotenoids estimation in various species and at different growth stages. In this study, we propose a new carotenoid index (CARI) for LCar assessment based on a large synthetic dataset simulated from the leaf radiative transfer model PROSPECT-5, and evaluate its capability with both simulated data from PROSPECT-5 and 4SAIL and extensive experimental datasets: the ANGERS dataset and experimental data acquired in field experiments in China in 2004. Results show that CARI was the index most linearly correlated with carotenoids content at the leaf level using a synthetic dataset (R² = 0.943, RMSE = 1.196 μg/cm²), compared with published spectral indices. Cross-validation results with CARI using ANGERS data achieved quite an accurate estimation (R² = 0.545, RMSE = 3.413 μg/cm²), though the RBRI performed as the best index (R² = 0.727, RMSE = 2.640 μg/cm²). CARI also showed good accuracy (R² = 0.639, RMSE = 1.520 μg/cm²) for LCar assessment with leaf level field survey data, though PRI performed better (R² = 0.710, RMSE = 1.369 μg/cm²). Whereas RBRI, PRI and other assessed spectral indices showed a good performance for a given dataset, overall their estimation accuracy was not consistent across all datasets used in this study. Conversely CARI was more robust showing good results in all datasets. Further assessment of LCar with simulated and measured canopy reflectance data indicated that CARI might not be very sensitive to LCar changes at low leaf area index (LAI) value, and in these conditions soil moisture influenced the LCar retrieval accuracy.     

Detection of stress in tomatoes induced by late blight disease in California, USA, using hyperspectral remote sensing

Large-scale farming of agricultural crops requires on-time detection of diseases for pest management. Hyperspectral remote sensing data taken from low-altitude flights usually have high spectral and spatial resolutions, which can be very useful in detecting stress in green vegetation. In this study, we used late blight in tomatoes to illustrate the capability of applying hyperspectral remote sensing to monitor crop disease in the field scale and to develop the methodologies for the purpose. A series of field experiments was conducted to collect the canopy spectral reflectance of tomato plants in a diseased tomato field in Salinas Valley of California. The disease severity varied from stage 1 (the light symptom), to stage 4 (the sever damage). The economic damage of the crop caused by the disease is around the disease stage 3. An airborne visible infrared imaging spectrometer (AVIRIS) image with 224 bands within the wavelength range of 0.4–2.5 μm was acquired during the growing season when the field data were collected. The spectral reflectance of the field samples indicated that the near infrared (NIR) region, especially 0.7–1.3 μm, was much more valuable than the visible range to detect crop disease. The difference of spectral reflectance in visible range between health plants and the infected ones at stage 3 was only 1.19%, while the difference in the NIR region was high, 10%. We developed an approach including the minimum noise fraction (MNF) transformation, multi-dimensional visualization, pure pixels endmember selection and spectral angle mapping (SAM) to process the hyperspectral image for identification of diseased tomato plants. The results of MNF transformation indicated that the first 28 eigenimages contain useful information for classification of the pixels and the rest were mainly noise-dominated due to their low eigenvalues that had few signals. Therefore, the 28 signal eigenimages were used to generate a multi-dimensional visualization space for endmember spectra selection and SAM. Classification with the SAM technique of plants’ spectra showed that the late blight diseased tomatoes at stage 3 or above could be separated from the healthy plants while the less infected plants (at stage 1 or 2) were difficult to separate from the healthy plants. The results of the image analysis were consistent with the field spectra. The mapped disease distribution at stage 3 or above from the image showed an accurate conformation of late blight occurrence in the field. This result not only confirmed the capability of hyperspectral remote sensing in detecting crop disease for precision disease management in the real world, but also demonstrated that the spectra-based classification approach is an applicable method to crop disease identification.     

MERIS and the red-edge position

The Medium Resolution Imaging Spectrometer (MERIS) is a payload component of Envisat-1. MERIS will be operated over land with a standard 15 band setting acquiring images with a 300 m spatial resolution. The red-edge position (REP) is a promising variable for deriving foliar chlorophyll concentration, which plays an important role in ecosystem processes. The objectives of this paper are: (1) to study which factors effect the REP of vegetation, (2) to study whether this REP can be derived from the MERIS standard band setting and (3) to show what REP represents at the scale of MERIS data. Two different data sets were explored for simulating the REP using MERIS bands: (1) simulated data using reflectance models and (2) airborne reflectance spectra of an agricultural area obtained by the airborne visible-infrared imaging spectrometer (AVIRIS). A “linear method”, assuming a straight slope of the reflectance spectrum around the midpoint of the slope, was a robust method for determining the REP and the MERIS bands at 665, 708.75, 753.75 and 778.75 nm could be used for applying the “linear method” for REP estimation. Results of the translation to the scale of MERIS data were very promising for applying MERIS at, for instance, the ecosystem level.     

Brown and green LAI mapping through spectral indices

When crops senescence, leaves remain until they fall off or are harvested. Hence, leaf area index (LAI) stays high even when chlorophyll content degrades to zero. Current LAI approaches from remote sensing techniques are not optimized for estimating LAI of senescent vegetation. In this paper a two-step approach has been proposed to realize simultaneous LAI mapping over green and senescent croplands. The first step separates green from brown LAI by means of a newly proposed index, ‘Green Brown Vegetation Index (GBVI)’. This index exploits two shortwave infrared (SWIR) spectral bands centred at 2100 and 2000 nm, which fall right in the dry matter absorption regions, thereby providing positive values for senescent vegetation and negative for green vegetation. The second step involves applying linear regression functions based on optimized vegetation indices to estimate green and brown LAI estimation respectively. While the green LAI index uses a band in the red and a band in the red-edge, the brown LAI index uses bands located in the same spectral region as GBVI, i.e. an absorption band located in the region of maximum absorption of cellulose and lignin at 2154 nm, and a reference band at 1635 nm where the absorption of both water and dry matter is low. The two-step approach was applied to a HyMap image acquired over an agroecosystem at the agricultural site Barrax, Spain.     

Predicting grain protein content of winter wheat using remote sensing data based on nitrogen status and water stress

Advanced site-specific knowledge of grain protein content of winter wheat from remote sensing data would provide opportunities to manage grain harvest differently, and to maximize output by adjusting input in fields. In this study, remote sensing data were utilized to predict grain protein content. Firstly, the leaf nitrogen content at winter wheat anthesis stage was proved to be significantly correlated with grain protein content (R² = 0.36), and spectral indices significantly correlated to leaf nitrogen content at anthesis stage were potential indicators for grain protein content. The vegetation index, VI_green, derived from the canopy spectral reflectance at green and red bands, was significantly correlated to the leaf nitrogen content at anthesis stage, and also highly significantly correlated to the final grain protein content (R² = 0.46). Secondly, the external conditions, such as irrigation, fertilization and temperature, had important influence on grain quality. Water stress at grain filling stage can increase grain protein content, and leaf water content is closely related to irrigation levels, therefore, the spectral indices correlated to leaf water content can be potential indicators for grain protein content. The spectral reflectance of TM channel 5 derived from canopy spectra or image data at grain filling stage was all significantly correlated to grain protein content (R² = 0.31 and 0.37, respectively). Finally, not only this study proved the feasibility of using remote sensing data to predict grain protein content, but it also provided a tentative prediction of the grain protein content in Beijing area using the reflectance image of TM channel 5.