A visible band index for remote sensing leaf chlorophyll content at the canopy scale

Leaf chlorophyll content is an important variable for agricultural remote sensing because of its close relationship to leaf nitrogen content. The triangular greenness index (TGI) was developed based on the area of a triangle surrounding the spectral features of chlorophyll with points at (670 nm, R₆₇₀), (550 nm, R₅₅₀), and (480 nm, R₄₈₀), where R_λ is the spectral reflectance at wavelengths of 670, 550 and 480, respectively. The equation is TGI = −0.5[(670 − 480)(R₆₇₀ − R₅₅₀) − (670 − 550)(R₆₇₀ − R₄₈₀)]. In 1999, investigators funded by NASA's Earth Observations Commercialization and Applications Program collaborated on a nitrogen fertilization experiment with irrigated maize in Nebraska. Airborne Visible/Infrared Imaging Spectrometer (AVIRIS) data and Landsat 5 Thematic Mapper (TM) data were acquired along with leaf chlorophyll meter and other data on three dates in July during late vegetative growth and early reproductive growth. TGI was consistently correlated with plot-averaged chlorophyll-meter values at the spectral resolutions of AVIRIS, Landsat TM, and digital cameras. Simulations using the Scattering by Arbitrarily Inclined Leaves (SAIL) canopy model indicate an interaction among TGI, leaf area index (LAI) and soil type at low crop LAI, whereas at high LAI and canopy closure, TGI was only affected by leaf chlorophyll content. Therefore, TGI may be the best spectral index to detect crop nitrogen requirements with low-cost digital cameras mounted on low-altitude airborne platforms.     

Retrieval of leaf water content spanning the visible to thermal infrared spectra

The objective of this study was to investigate the entire spectra (from visible to the thermal infrared; 0.390–14.0 μm) to retrieve leaf water content in a consistent manner. Narrow-band spectral indices (calculated from all possible two band combinations) and a partial least square regression (PLSR) were used to assess the strength of each spectral region. The coefficient of determination (R²) and root mean square error (RMSE) were used to report the prediction accuracy of spectral indices and PLSR models. In the visible-near infrared and shortwave infrared (VNIR–SWIR), the most accurate spectral index yielded R² of 0.89 and RMSE of 7.60%, whereas in the mid infrared (MIR) the highest R² was 0.93 and RMSE of 5.97%. Leaf water content was poorly predicted using two-band indices developed from the thermal infrared (R² = 0.33). The most accurate PLSR model resulted from MIR reflectance spectra (R² = 0.96, RMSE = 4.74% and RMSE cross validation RMSE_CV = 6.17%) followed by VNIR–SWIR reflectance spectra (R² = 0.91, RMSE = 6.90% and RMSE_CV = 7.32%). Using thermal infrared (TIR) spectra, the PLSR model yielded a moderate retrieval accuracy (R² = 0.67, RMSE = 13.27% and RMSE_CV = 16.39%). This study demonstrated that the mid infrared (MIR) and shortwave infrared (SWIR) domains were the most sensitive spectral region for the retrieval of leaf water content.     

Hyperspectral-based predictive modelling of grapevine water status in the Portuguese Douro wine region

In this study, hyperspectral reflectance (HySR) data derived from a handheld spectroradiometer were used to assess the water status of three grapevine cultivars in two sub-regions of Douro wine region during two consecutive years. A large set of potential predictors derived from the HySR data were considered for modelling/predicting the predawn leaf water potential (Ψ_pd) through different statistical and machine learning techniques. Three HySR vegetation indices were selected as final predictors for the computation of the models and the in-season time trend was removed from data by using a time predictor. The vegetation indices selected were the Normalized Reflectance Index for the wavelengths 554 nm and 561 nm (NRI_554;561), the water index (WI) for the wavelengths 900 nm and 970 nm, and the D1 index which is associated with the rate of reflectance increase in the wavelengths of 706 nm and 730 nm. These vegetation indices covered the green, red edge and the near infrared domains of the electromagnetic spectrum. A large set of state-of-the-art analysis and statistical and machine-learning modelling techniques were tested. Predictive modelling techniques based on generalized boosted model (GBM), bagged multivariate adaptive regression splines (B-MARS), generalized additive model (GAM), and Bayesian regularized neural networks (BRNN) showed the best performance for predicting Ψ_pd, with an average determination coefficient (R²) ranging between 0.78 and 0.80 and RMSE varying between 0.11 and 0.12 MPa. When cultivar Touriga Nacional was used for training the models and the cultivars Touriga Franca and Tinta Barroca for testing (independent validation), the models performance was good, particularly for GBM (R² = 0.85; RMSE = 0.09 MPa). Additionally, the comparison of Ψ_pd observed and predicted showed an equitable dispersion of data from the various cultivars. The results achieved show a good potential of these predictive models based on vegetation indices to support irrigation scheduling in vineyard.     

Comparison of UAV and WorldView-2 imagery for mapping leaf area index of mangrove forest

Unmanned Aerial Vehicle (UAV) remote sensing has opened the door to new sources of data to effectively characterize vegetation metrics at very high spatial resolution and at flexible revisit frequencies. Successful estimation of the leaf area index (LAI) in precision agriculture with a UAV image has been reported in several studies. However, in most forests, the challenges associated with the interference from a complex background and a variety of vegetation species have hindered research using UAV images. To the best of our knowledge, very few studies have mapped the forest LAI with a UAV image. In addition, the drawbacks and advantages of estimating the forest LAI with UAV and satellite images at high spatial resolution remain a knowledge gap in existing literature. Therefore, this paper aims to map LAI in a mangrove forest with a complex background and a variety of vegetation species using a UAV image and compare it with a WorldView-2 image (WV2).In this study, three representative NDVIs, average NDVI (AvNDVI), vegetated specific NDVI (VsNDVI), and scaled NDVI (ScNDVI), were acquired with UAV and WV2 to predict the plot level (10 × 10 m) LAI. The results showed that AvNDVI achieved the highest accuracy for WV2 (R² = 0.778, RMSE = 0.424), whereas ScNDVI obtained the optimal accuracy for UAV (R² = 0.817, RMSE = 0.423). In addition, an overall comparison results of the WV2 and UAV derived LAIs indicated that UAV obtained a better accuracy than WV2 in the plots that were covered with homogeneous mangrove species or in the low LAI plots, which was because UAV can effectively eliminate the influence from the background and the vegetation species owing to its high spatial resolution. However, WV2 obtained a slightly higher accuracy than UAV in the plots covered with a variety of mangrove species, which was because the UAV sensor provides a negative spectral response function(SRF) than WV2 in terms of the mangrove LAI estimation.     

Retrieving aboveground biomass of wetland Phragmites australis (common reed) using a combination of airborne discrete-return LiDAR and hyperspectral data

Wetland biomass is essential for monitoring the stability and productivity of wetland ecosystems. Conventional field methods to measure or estimate wetland biomass are accurate and reliable, but expensive, time consuming and labor intensive. This research explored the potential for estimating wetland reed biomass using a combination of airborne discrete-return Light Detection and Ranging (LiDAR) and hyperspectral data. To derive the optimal predictor variables of reed biomass, a range of LiDAR and hyperspectral metrics at different spatial scales were regressed against the field-observed biomasses. The results showed that the LiDAR-derived H_p99 (99th percentile of the LiDAR height) and hyperspectral-calculated modified soil-adjusted vegetation index (MSAVI) were the best metrics for estimating reed biomass using the single regression model. Although the LiDAR data yielded a higher estimation accuracy compared to the hyperspectral data, the combination of LiDAR and hyperspectral data produced a more accurate prediction model for reed biomass (R² = 0.648, RMSE = 167.546 g/m², RMSE_r = 20.71%) than LiDAR data alone. Thus, combining LiDAR data with hyperspectral data has a great potential for improving the accuracy of aboveground biomass estimation.     

A new calibration of the effective scattering albedo and soil roughness parameters in the SMOS SM retrieval algorithm

This study focuses on the calibration of the effective vegetation scattering albedo (ω) and surface soil roughness parameters (H_R, and N_Rp, p = H,V) in the Soil Moisture (SM) retrieval from L-band passive microwave observations using the L-band Microwave Emission of the Biosphere (L-MEB) model. In the current Soil Moisture and Ocean Salinity (SMOS) Level 2 (L2), v620, and Level 3 (L3), v300, SM retrieval algorithms, low vegetated areas are parameterized by ω = 0 and H_R = 0.1, whereas values of ω = 0.06 − 0.08 and H_R = 0.3 are used for forests. Several parameterizations of the vegetation and soil roughness parameters (ω, H_R and N_Rp, p = H,V) were tested in this study, treating SMOS SM retrievals as homogeneous over each pixel instead of retrieving SM over a representative fraction of the pixel, as implemented in the operational SMOS L2 and L3 algorithms. Globally-constant values of ω = 0.10, H_R = 0.4 and N_Rp = −1 (p = H,V) were found to yield SM retrievals that compared best with in situ SM data measured at many sites worldwide from the International Soil Moisture Network (ISMN). The calibration was repeated for collections of in situ sites classified in different land cover categories based on the International Geosphere-Biosphere Programme (IGBP) scheme. Depending on the IGBP land cover class, values of ω and H_R varied, respectively, in the range 0.08–0.12 and 0.1–0.5. A validation exercise based on in situ measurements confirmed that using either a global or an IGBP-based calibration, there was an improvement in the accuracy of the SM retrievals compared to the SMOS L3 SM product considering all statistical metrics (R = 0.61, bias = −0.019 m³ m⁻³, ubRMSE = 0.062 m³ m⁻³ for the IGBP-based calibration; against R = 0.54, bias = −0.034 m³ m⁻³ and ubRMSE = 0.070 m³ m⁻³ for the SMOS L3 SM product). This result is a key step in the calibration of the roughness and vegetation parameters in the operational SMOS retrieval algorithm. The approach presented here is the core of a new forthcoming SMOS optimized SM product.     

Comparative analysis of different uni- and multi-variate methods for estimation of vegetation water content using hyper-spectral measurements

Assessment of vegetation water content is critical for monitoring vegetation condition, detecting plant water stress, assessing the risk of forest fires and evaluating water status for irrigation. The main objective of this study was to investigate the performance of various mono- and multi-variate statistical methods for estimating vegetation water content (VWC) from hyper-spectral data. Hyper-spectral data is influenced by multi-collinearity because of a large number of (independent) spectral bands being modeled by a small number of (dependent) biophysical variables. Therefore, some full spectrum methods that are known to be suitable for analyzing multi-collinear data set were chosen. Canopy spectral reflectance was obtained with a GER 3700 spectro-radiometer (400–2400 nm) in a laboratory setting and VWC was measured by calculating wet/dry weight difference per unit of ground area (g/m²) of each plant canopy (n = 95). Three multivariate statistical methods were applied to estimate VWC: (1) partial least square regression, (2) artificial neural network and (3) principal component regression. They were selected to minimize the problem related to multi-collinearity. For comparison, uni-variate techniques including narrow band ratio water index (RWI), normalized difference water index (NDWI), second soil adjusted vegetation index (SAVI2) and transferred soil adjusted vegetation index (TSAVI) were applied. For each type of vegetation index, all two-band combinations were evaluated to determine the best band combination. Validation of the methods was based on the cross validation procedure and using three statistical indicators: R², RMSE and relative RMSE. The cross-validated results identified PLSR as the regression model providing the most accurate estimates of VWC among the various methods. The result revealed that this model is highly recommended for use with multi-collinear datasets ($R_{\text{CV}}^2=0.94$, RRMSE_CV = 0.23). Principal component regression exhibited the lowest accuracy among the multivariate models ($R_{\text{CV}}^2=0.78$, RRMSE_CV = 0.41).     

Upscaling plot-scale soil respiration in winter wheat and summer maize rotation croplands in Julu County,North China

Soil respiration (R_s) data from 45 plots were used to estimate the spatial patterns of R_s during the peak growing seasons of winter wheat and summer maize in Julu County, North China, by combining satellite remote sensing data, field-measured data, and a support vector regression (SVR) model. The observed R_s values were well reproduced by the model at the plot scale, with a root-mean-square error (RMSE) of 0.31 μmol CO₂ m⁻² s⁻¹ and a coefficient of determination (R²) of 0.73. No significant difference was detected between the prediction accuracy of the SVR model for winter wheat and summer maize. With forcing from satellite remote sensing data and gridded soil property data, we used the SVR model to predict the spatial distributions of R_s during the peak growing seasons of winter wheat and summer maize rotation croplands in Julu County. The SVR model captured the spatial variations of R_s at the county scale. The satellite-derived enhanced vegetation index was found to be the most important input used to predict R_s. Removal of this variable caused an RMSE increase from 0.31 μmol CO₂ m⁻² s⁻¹ to 0.42 μmol CO₂ m⁻² s⁻¹. Soil properties such as soil organic carbon (SOC) content and soil bulk density (SBD) were the second most important factors. Their removal led to an RMSE increase from 0.31 μmol CO₂ m⁻² s⁻¹ to 0.37 μmol CO₂ m⁻² s⁻¹. The SVR model performed better than multiple regression in predicting spatial variations of R_s in winter wheat and summer maize rotation croplands, as shown by the comparison of the R² and RMSE values of the two algorithms. The spatial patterns of R_s are better captured using the SVR model than performing multiple regression, particularly for the relatively high and relatively low R_s values at the center and northeast study areas. Therefore, SVR shows promise for predicting spatial variations of R_s values on the basis of remotely sensed data and gridded soil property data at the county scale.     

Comparative analysis of different retrieval methods for mapping grassland leaf area index using airborne imaging spectroscopy

Fine scale maps of vegetation biophysical variables are useful status indicators for monitoring and managing national parks and endangered habitats. Here, we assess in a comparative way four different retrieval methods for estimating leaf area index (LAI) in grassland: two radiative transfer model (RTM) inversion methods (one based on look-up-tables (LUT) and one based on predictive equations) and two statistical modelling methods (one partly, the other entirely based on in situ data). For prediction, spectral data were used that had been acquired over Majella National Park in Italy by the airborne hyperspectral HyMap instrument. To assess the performance of the four investigated models, the normalized root mean squared error (nRMSE) and coefficient of determination (R²) between estimates and in situ LAI measurements are reported (n = 41). Using a jackknife approach, we also quantified the accuracy and robustness of empirical models as a function of the size of the available calibration data set. The results of the study demonstrate that the LUT-based RTM inversion yields higher accuracies for LAI estimation (R² = 0.91, nRMSE = 0.18) as compared to RTM inversions based on predictive equations (R² = 0.79, nRMSE = 0.38). The two statistical methods yield accuracies similar to the LUT method. However, as expected, the accuracy and robustness of the statistical models decrease when the size of the calibration database is reduced to fewer samples. The results of this study are of interest for the remote sensing community developing improved inversion schemes for spaceborne hyperspectral sensors applicable to different vegetation types. The examples provided in this paper may also serve as illustrations for the drawbacks and advantages of physical and empirical models.     

Determining iron content in Mediterranean soils in partly vegetated areas,using spectral reflectance and imaging spectroscopy

The possibility of quantifying iron content in the topsoil of the slopes of the El Hacho Mountain complex in Southern Spain using imaging spectroscopy is investigated. Laboratory, field and airborne spectrometer (ROSIS) data are acquired, in combination with soil samples, which are analysed for dithionite extractable iron (Fe_d) content. Analysis of the properties of two iron related absorption features present in laboratory spectra demonstrates good relations, especially between the standard deviation (S.D.) of the values in an absorption feature and the Fe_d content (R² = 0.67) as well as the ratio based Redness Index (R² = 0.51). Such derived relations are less strong for the ROSIS data (R² for S.D. = 0.26 and R² for Redness Index = 0.22). The spatial distribution of iron in vegetated areas shows a strong sensitivity of these relations with the presence of vegetation. A combination of both methods shows that the overestimation of the Fe_d content with the one method is (partly) compensated by the underestimation with the other method.     

Spectra and vegetation index variations in moss soil crust in different seasons,and in wet and dry conditions

Similar to vascular plants, non-vascular plant mosses have different periods of seasonal growth. There has been little research on the spectral variations of moss soil crust (MSC) over different growth periods. Few studies have paid attention to the difference in spectral characteristics between wet MSC that is photosynthesizing and dry MSC in suspended metabolism. The dissimilarity of MSC spectra in wet and dry conditions during different seasons needs further investigation. In this study, the spectral reflectance of wet MSC, dry MSC and the dominant vascular plant (Artemisia) were characterized in situ during the summer (July) and autumn (September). The variations in the normalized difference vegetation index (NDVI), biological soil crust index (BSCI) and CI (crust index) in different seasons and under different soil moisture conditions were also analyzed. It was found that (1) the spectral characteristics of both wet and dry MSCs varied seasonally; (2) the spectral features of wet MSC appear similar to those of the vascular plant, Artemisia, whether in summer or autumn; (3) both in summer and in autumn, much higher NDVI values were acquired for wet than for dry MSC (0.6 ∼ 0.7 vs. 0.3 ∼ 0.4 units), which may lead to misinterpretation of vegetation dynamics in the presence of MSC and with the variations in rainfall occurring in arid and semi-arid zones; and (4) the BSCI and CI values of wet MSC were close to that of Artemisia in both summer and autumn, indicating that BSCI and CI could barely differentiate between the wet MSC and Artemisia.     

Remotely detecting canopy nitrogen concentration and uptake of paddy rice in the Northeast China Plain

The influence of morphophysiological variation at different growth stages on the performance of vegetation indices for estimating plant N status has been confirmed. However, the underlying mechanisms explaining how this variation impacts hyperspectral measures and canopy N status are poorly understood. In this study, four field experiments involving different N rates were conducted to optimize the selection of sensitive bands and evaluate their performance for modeling canopy N status of rice at various growth stages in 2007 and 2008. The results indicate that growth stages negatively affect hyperspectral indices in different ways in modeling leaf N concentration (LNC), plant N concentration (PNC) and plant N uptake (PNU). Published hyperspectral indices showed serious limitations in estimating LNC, PNC and PNU. The newly proposed best 2-band indices significantly improved the accuracy for modeling PNU (R² = 0.75–0.85) by using the lambda by lambda band-optimized algorithm. However, the newly proposed 2-band indices still have limitations in modeling LNC and PNC because the use of only 2-band indices is not fully adequate to provide the maximum N-related information. The optimum multiple narrow band reflectance (OMNBR) models significantly increase the accuracy for estimating the LNC (R² = 0.67–0.71) and PNC (R² = 0.57–0.78) with six bands. Results suggest the combinations of center of red-edge (735 nm) with longer red-edge bands (730–760 nm) are very efficient for estimating PNC after heading, whereas the combinations of blue with green bands are more efficient for modeling PNC across all stages. The center of red-edge (730–735 nm) paired with early NIR bands (775–808 nm) are predominant in estimating PNU before heading, whereas the longer red-edge (750 nm) paired with the center of “NIR shoulder” (840–850 nm) are dominant in estimating PNU after heading and across all stages. The OMNBR models have the advantage of modeling canopy N status for the entire growth period. However, the best 2-band indices are much easier to use. Alternatively, it is also possible to use the best 2-band indices to monitor PNU before heading and PNC after heading. This study systematically explains the influences of N dilution effect on hyperspectral band combinations in relating to the different N variables and further recommends the best band combinations which may provide an insight for developing new hyperspectral vegetation indices.     

Application of 3D triangulations of airborne laser scanning data to estimate boreal forest leaf area index

We propose 3D triangulations of airborne Laser Scanning (ALS) point clouds as a new approach to derive 3D canopy structures and to estimate forest canopy effective LAI (LAI_e). Computational geometry and topological connectivity were employed to filter the triangulations to yield a quasi-optimal relationship with the field measured LAI_e. The optimal filtering parameters were predicted based on ALS height metrics, emulating the production of maps of LAI_e and canopy volume for large areas. The LAI_e from triangulations was validated with field measured LAI_e and compared with a reference LAI_e calculated from ALS data using logarithmic model based on Beer’s law. Canopy transmittance was estimated using All Echo Cover Index (ACI), and the mean projection of unit foliage area (β) was obtained using no-intercept regression with field measured LAI_e. We investigated the influence species and season on the triangulated LAI_e and demonstrated the relationship between triangulated LAI_e and canopy volume. Our data is from 115 forest plots located at the southern boreal forest area in Finland and for each plot three different ALS datasets were available to apply the triangulations. The triangulation approach was found applicable for both leaf-on and leaf-off datasets after initial calibration. Results showed the Root Mean Square Errors (RMSEs) between LAI_e from triangulations and field measured values agreed the most using the highest pulse density data (RMSE = 0.63, the coefficient of determination (R²) = 0.53). Yet, the LAI_e calculated using ACI-index agreed better with the field measured LAI_e (RMSE = 0.53 and R² = 0.70). The best models to predict the optimal alpha value contained the ACI-index, which indicates that within-crown transmittance is accounted by the triangulation approach. The cover indices may be recommended for retrieving LAI_e only, but for applications which require more sophisticated information on canopy shape and volume, such as radiative transfer models, the triangulation approach may be preferred.     

Estimating fractional vegetation cover and the vegetation index of bare soil and highly dense vegetation with a physically based method

Normalized difference vegetation index (NDVI) of highly dense vegetation (NDVI_v) and bare soil (NDVI_s), identified as the key parameters for Fractional Vegetation Cover (FVC) estimation, are usually obtained with empirical statistical methods However, it is often difficult to obtain reasonable values of NDVI_v and NDVI_s at a coarse resolution (e.g., 1 km), or in arid, semiarid, and evergreen areas. The uncertainty of estimated NDVI_s and NDVI_v can cause substantial errors in FVC estimations when a simple linear mixture model is used. To address this problem, this paper proposes a physically based method. The leaf area index (LAI) and directional NDVI are introduced in a gap fraction model and a linear mixture model for FVC estimation to calculate NDVI_v and NDVI_s. The model incorporates the Moderate Resolution Imaging Spectroradiometer (MODIS) Bidirectional Reflectance Distribution Function (BRDF) model parameters product (MCD43B1) and LAI product, which are convenient to acquire. Two types of evaluation experiments are designed 1) with data simulated by a canopy radiative transfer model and 2) with satellite observations. The root-mean-square deviation (RMSD) for simulated data is less than 0.117, depending on the type of noise added on the data. In the real data experiment, the RMSD for cropland is 0.127, for grassland is 0.075, and for forest is 0.107. The experimental areas respectively lack fully vegetated and non-vegetated pixels at 1 km resolution. Consequently, a relatively large uncertainty is found while using the statistical methods and the RMSD ranges from 0.110 to 0.363 based on the real data. The proposed method is convenient to produce NDVI_v and NDVI_s maps for FVC estimation on regional and global scales.     

Estimation of higher chlorophylla concentrations using field spectral measurement and HJ-1A hyperspectral satellite data in Dianshan Lake,China

Based on in situ water sampling and field spectral measurements in Dianshan Lake, a semi-analytical three-band algorithm was used to estimate Chlorophylla (Chla) content in case II waters. The three bands selected to estimate Chla for high concentrations included 653, 691 and 748 nm. An equation, based on the difference in reciprocal reflectance between 653 and 691 nm, multiplied by reflectance at 748 nm as [R_rs⁻¹(653) − R_rs⁻¹ (691)] R_rs(748), explained 85.57% of variance in Chla concentration with a root mean square error (RMSE) of <6.56 mg/m³. In order to test the utility of this model with satellite data, HJ-1A Hyperspectral Imager (HSI) data were analyzed using comparable wavelengths selected from the in situ data [B₆₇⁻¹(656) − B₈₀⁻¹(716)] B₈₇(753). This model accounted for 84.3% of Chla variation, estimating Chla concentrations with an RMSE of <4.23 mg/m³. The results illustrate that, based on the determined wavelengths, the spectrum-based model can achieve a high estimation accuracy and can be applied to hyperspectral satellite imagery especially for higher Chla concentration waters.     

Quantifying winter wheat residue biomass with a spectral angle index derived from China Environmental Satellite data

Quantification of crop residue biomass on cultivated lands is essential for studies of carbon cycling of agroecosystems, soil-atmospheric carbon exchange and Earth systems modeling. Previous studies focus on estimating crop residue cover (CRC) while limited research exists on quantifying crop residue biomass. This study takes advantage of the high temporal resolution of the China Environmental Satellite (HJ-1) data and utilizes the band configuration features of HJ-1B data to establish spectral angle indices to estimate crop residue biomass. Angles formed at the NIR_IRS vertex by the three vertices at R, NIR_IRS, and SWIR (ANIR_IRS) of HJ-1B can effectively indicate winter wheat residue biomass. A coefficient of determination (R²) of 0.811 was obtained between measured winter wheat residue biomass and ANIR_IRS derived from simulated HJ-1B reflectance data. The ability of ANIR_IRS for quantifying winter wheat residue biomass using HJ-1B satellite data was also validated and evaluated. Results indicate that ANIR_IRS performed well in estimating winter wheat residue biomass with different residue treatments; the root mean square error (RMSE) between measured and estimated residue biomass was 0.038 kg/m². ANIR_IRS is a potential method for quantifying winter wheat residue biomass at a large scale due to wide swath width (350 km) and four-day revisit rate of the HJ-1 satellite. While ANIR_IRS can adequately estimate winter wheat residue biomass at different residue moisture conditions, the feasibility of ANIR_IRS for winter wheat residue biomass estimation at different fractional coverage of green vegetation and different environmental conditions (soil type, soil moisture content, and crop residue type) needs to be further explored.     

Brown and green LAI mapping through spectral indices

When crops senescence, leaves remain until they fall off or are harvested. Hence, leaf area index (LAI) stays high even when chlorophyll content degrades to zero. Current LAI approaches from remote sensing techniques are not optimized for estimating LAI of senescent vegetation. In this paper a two-step approach has been proposed to realize simultaneous LAI mapping over green and senescent croplands. The first step separates green from brown LAI by means of a newly proposed index, ‘Green Brown Vegetation Index (GBVI)’. This index exploits two shortwave infrared (SWIR) spectral bands centred at 2100 and 2000 nm, which fall right in the dry matter absorption regions, thereby providing positive values for senescent vegetation and negative for green vegetation. The second step involves applying linear regression functions based on optimized vegetation indices to estimate green and brown LAI estimation respectively. While the green LAI index uses a band in the red and a band in the red-edge, the brown LAI index uses bands located in the same spectral region as GBVI, i.e. an absorption band located in the region of maximum absorption of cellulose and lignin at 2154 nm, and a reference band at 1635 nm where the absorption of both water and dry matter is low. The two-step approach was applied to a HyMap image acquired over an agroecosystem at the agricultural site Barrax, Spain.     

A practical algorithm for estimating surface soil moisture using combined optical and thermal infrared data

Surface soil moisture (SSM) is a critical variable for understanding the energy and water exchange between the land and atmosphere. A multi-linear model was recently developed to determine SSM using ellipse variables, namely, the center horizontal coordinate (x₀), center vertical coordinate (y₀), semi-major axis (a) and rotation angle (θ), derived from the elliptical relationship between diurnal cycles of land surface temperature (LST) and net surface shortwave radiation (NSSR). However, the multi-linear model has a major disadvantage. The model coefficients are calculated based on simulated data produced by a land surface model simulation that requires sufficient meteorological measurements. This study aims to determine the model coefficients directly using limited meteorological parameters rather than via the complicated simulation process, decreasing the dependence of the model coefficients on meteorological measurements. With the simulated data, a practical algorithm was developed to estimate SSM based on combined optical and thermal infrared data. The results suggest that the proposed approach can be used to determine the coefficients associated with all ellipse variables based on historical meteorological records, whereas the constant term varies daily and can only be determined using the daily maximum solar radiation in a prediction model. Simulated results from three FLUXNET sites over 30 cloud-free days revealed an average root mean square error (RMSE) of 0.042 m³/m³ when historical meteorological records were used to synchronously determine the model coefficients. In addition, estimated SSM values exhibited generally moderate accuracies (coefficient of determination R² = 0.395, RMSE = 0.061 m³/m³) compared to SSM measurements at the Yucheng Comprehensive Experimental Station.     

Modelling the Gross Primary Productivity of West Africa with the Regional Biomass Model RBM+, using optimized 250 m MODIS FPAR and fractional vegetation cover information

Global warming associated with climate change is one of the greatest challenges of today’s world. Increasing emissions of the greenhouse gas CO₂ are considered as a major contributing factor to global warming. One regulating factor of CO₂ exchange between atmosphere and land surface is vegetation. Measurements of land cover changes in combination with modelling the Gross Primary Productivity (GPP) can contribute to determine important sources and sinks of CO₂.The aim of this study is to accurately model the GPP for a region in West Africa with a spatial resolution of 250 m, and the differentiation of GPP based on woody and herbaceous vegetation. For this purpose, the Regional Biomass Model (RBM) was applied, which is based on a Light Use Efficiency (LUE) approach. The focus was on the spatial enhancement of the RBM from the original 1000–250 m spatial resolution (RBM+). The adaptation to the 250 m scale included the modification of two main input parameters: (1) the fraction of absorbed Photosynthetically Active Radiation (FPAR) based on the 1000 m MODIS MOD15A2 FPAR product which was downscaled to 250 m using MODIS NDVI time series; (2) the fractional cover of woody and herbaceous vegetation, which was improved by using a multi-scale approach. For validation and regional adjustments of GPP and the input parameters, in situ data from a climate station and eddy covariance measurements were integrated.The results of this approach show that the input parameters could be improved significantly: downscaling considerably reduces data gaps of the original FPAR product and the improved dataset differed less than 5.0% from the original data for cloud free regions. The RMSE of the fractional vegetation cover varied between 5.1 and 12.7%. Modelled GPP showed a slight overestimation in comparison to eddy covariance measurements. The in situ data was exceeded by 8.8% for 2005 and by 2.0% for 2006. The model results were converted to NPP and also agreed well with previous NPP measurements reported from different studies. Altogether a high accuracy and suitability of the regionally adjusted and downscaled model RBM+ can be concluded. The differentiation between vegetation growth forms allows a separation of long-term and short-term carbon storage based on woody and herbaceous vegetation, respectively.     

Improving the prediction of arsenic contents in agricultural soils by combining the reflectance spectroscopy of soils and rice plants

Visible and near-infrared reflectance spectroscopy provides a beneficial tool for investigating soil heavy metal contamination. This study aimed to investigate mechanisms of soil arsenic prediction using laboratory based soil and leaf spectra, compare the prediction of arsenic content using soil spectra with that using rice plant spectra, and determine whether the combination of both could improve the prediction of soil arsenic content. A total of 100 samples were collected and the reflectance spectra of soils and rice plants were measured using a FieldSpec3 portable spectroradiometer (350–2500 nm). After eliminating spectral outliers, the reflectance spectra were divided into calibration (n = 62) and validation (n = 32) data sets using the Kennard-Stone algorithm. Genetic algorithm (GA) was used to select useful spectral variables for soil arsenic prediction. Thereafter, the GA-selected spectral variables of the soil and leaf spectra were individually and jointly employed to calibrate the partial least squares regression (PLSR) models using the calibration data set. The regression models were validated and compared using independent validation data set. Furthermore, the correlation coefficients of soil arsenic against soil organic matter, leaf arsenic and leaf chlorophyll were calculated, and the important wavelengths for PLSR modeling were extracted. Results showed that arsenic prediction using the leaf spectra (coefficient of determination in validation, R_v² = 0.54; root mean square error in validation, RMSE_v = 12.99 mg kg⁻¹; and residual prediction deviation in validation, RPD_v = 1.35) was slightly better than using the soil spectra (R_v² = 0.42, RMSE_v = 13.35 mg kg⁻¹, and RPD_v = 1.31). However, results also showed that the combinational use of soil and leaf spectra resulted in higher arsenic prediction (R_v² = 0.63, RMSE_v = 11.94 mg kg⁻¹, RPD_v = 1.47) compared with either soil or leaf spectra alone. Soil spectral bands near 480, 600, 670, 810, 1980, 2050 and 2290 nm, leaf spectral bands near 700, 890 and 900 nm in PLSR models were important wavelengths for soil arsenic prediction. Moreover, soil arsenic showed significantly positive correlations with soil organic matter (r = 0.62, p < 0.01) and leaf arsenic (r = 0.77, p < 0.01), and a significantly negative correlation with leaf chlorophyll (r = −0.67, p < 0.01). The results showed that the prediction of arsenic contents using soil and leaf spectra may be based on their relationships with soil organic matter and leaf chlorophyll contents, respectively. Although RPD of 1.47 was below the recommended RPD of >2 for soil analysis, arsenic prediction in agricultural soils can be improved by combining the leaf and soil spectra.