Modelling growth and reproduction of the Pacific oyster Crassostrea gigas: Advances in the oyster-DEB model through application to a coastal pond

A bio-energetic model, based on the DEB theory exists for the Pacific oyster Crassostrea gigas. Pouvreau et al. [Pouvreau, S., Bourles, Y., Lefebvre, S., Gangnery, A., Alunno-Bruscia, M., 2006. Application of a dynamic energy budget model to the Pacific oyster, C. gigas, reared under various environmental conditions. J. Sea Res. 56, 156–167.] successfully applied this model to oysters reared in three environments with no tide and low turbidity, using chlorophyll a concentration as food quantifier. However, the robustness of the oyster-DEB model needs to be validated in varying environments where different food quantifiers reflect the food available for oysters, as is the case in estuaries and most coastal ecosystems. We therefore tested the oyster-DEB model on C. gigas reared in an Atlantic coastal pond from January 2006 to January 2007. The model relies on two forcing variables: seawater temperature and food density monitored through various food quantifiers. Based on the high temperature range measured in this oyster pond (3–30 °C), new boundary values of the temperature tolerance range were estimated both for ingestion and respiration rates. Several food quantifiers were then tested to select the most suitable for explaining the observed growth and reproduction of C. gigas reared in an oyster pond. These were: particulate organic matter and carbon, chlorophyll a concentration and phytoplankton enumeration (expressed in cell number per litre or in cumulative cell biovolume). We conclude that when phytoplankton enumeration was used as food quantifier, the new version of oyster-DEB model presented here reproduced the growth and reproduction of C. gigas very accurately. The next step will be to validate the model under contrasting coastal environmental conditions so as to confirm the accuracy of phytoplankton enumeration as a way of representing the available food that sustains oyster growth.     

Growth and reproduction of the bivalve Spisula subtruncata (da Costa) in Dutch coastal waters

The bivalve Spisula subtruncata is usually abundant in shallow coastal waters along the Dutch coast. However, its biomass has been decreasing since 1995. In order to assess whether reproductive failure may be the cause of the observed decline over the last decades, the energy investment in reproduction of a population of S. subtruncata from central Dutch coastal waters was studied. The population studied consisted of individuals of up to four years old. Shell length reached maximum values of around 32 mm and individual total body, somatic and gonadal ash-free dry mass reached maximum values of about 278 mg AFDM, 252 mg AFDM and 76 mg AFDM, respectively. A clear seasonal cycle in somatic and gonadal mass was observed. Somatic and gonadal mass indices increased in early spring and reached maximum values during summer, followed by a decrease to minimum values at the beginning of the following year. Spawning was in June–July and settlement of spat seems to have occurred in July–August. Mean oocyte diameter was 57.43 ± 0.03 μm, corresponding to a volume of 98972 μm³. These results suggested that reproductive failure was not the cause of the current population decline. Most likely, unsuccessful settlement of spat and/or severe predation during the first months of life were responsible for the observed patterns.     

Differential recruitment of introduced Pacific oysters and native mussels at the North Sea coast: coexistence possible?

Pacific oysters (Crassostrea gigas Thunberg 1793) have been introduced into the Wadden Sea (North Sea), where they settle on native mussel beds (Mytilus edulis L.), which represent the only extensive insular hard substrata in this soft-sediment environment. As abundances of C. gigas rose, some mussel beds became increasingly overgrown with oysters, whereas others did not. Field experiments revealed that recruitment of C. gigas was higher in the lower intertidal than in the upper subtidal zone, that it was higher on conspecifics than on mussels, and that it was not affected by barnacle epigrowth except when settling on mussels. Mussel recruitment is known from inter- and subtidal zones. It occurred equally on oyster and mussel shells but showed a clear preference for barnacle epigrowth over clean shells. Assuming that settlement and recruitment are key processes for species abundances on the North Sea coast, it is predicted that the positive feedback in oyster settlement will lead to rapid reef formation of this invader at the expense of mussel beds. Mussels, however, may escape competitive exclusion by settling between or on the larger oysters especially when barnacles are abundant. Experimental patches with mussels were more often covered by fucoid algae (Fucus vesiculosus forma mytili Nienburg) than patches with oysters, and oyster recruitment was poor underneath such algal canopies. Thus, fucoids may provide the native mussels with a refuge from the invading oysters and the two bivalves may coexist, provided food is not limiting.     

Differential response of benthic macrofauna to the formation of novel oyster reefs (Crassostrea gigas,Thunberg) on soft and rocky substrate in the intertidal of the Bay of Brest,France

When the Pacific oyster (Crassostrea gigas, Thunberg) was introduced into France for aquaculture in the mid-sixties, it was initially confined to the sites where it was farmed. Subsequent global warming most likely facilitated the establishment of wild populations throughout the French coastline. This phenomenon of spread has become so great that oyster reefs have recently appeared in sheltered estuaries, on both soft and hard substrate. The present study examined two such sites in the Bay of Brest, Brittany. It is the first to investigate the impacts of this new substrate on the biocoenosis of uncolonised intertidal habitats in France. Increased species richness and abundance of intertidal macrofauna were observed in the presence of oyster reefs on both, mud (4 and 20 fold respectively) and rock (5 fold for both). The dominance of suspension feeders in mud changed to carnivores in reefs and their underlying sediment. Calculation of biotic coefficients (BC) of the soft-bottom fauna revealed only a slight organic enrichment, and the organic and silt composition in the sediment beneath oyster reefs were not significantly different from that on bare sites. On rock, the dominance of grazers remained unchanged between bare rock and oyster reef, while reef on rock was also characterised by deposit and detritic feeders. C. gigas is suspected to cause a homogenisation of coastal habitats with an impoverishment of overall quality but we detected only 11 common species between reefs on mud (60 species) and those on rock (55 species).     

Population dynamics of the venerid bivalve Callista chione (L.) in a coastal area of the eastern Mediterranean

The venerid bivalve Callista chione is the most prominent suspension-feeding bivalve inhabiting the soft bottom of coastal areas in the northern Euboikos Gulf (Aegean Sea), where it is exploited by small-scale fishery. The parameters of the von Bertalanffy growth function were estimated and the somatic production-to-biomass ratio was found to be 0.45 y⁻¹. The maximum age of adult individuals was 17 years. The species is gonochoristic, its oocyte diameter ranged from 54.5 to 120 μm with a conspicuous jelly-coat. Microscopical examination of the gonads showed that gonadal production did not start until the second year of life. The observations on the gonadal cycle indicate that this bivalve is capable of year-round reproduction.     

Cadmium in Mytilus spp.: Worldwide survey and relationship between seawater and mussel content

A worldwide literature survey of data on cadmium concentration in the soft tissue of the mussel, Mytilus spp., from 591 stations is presented. These stations are from 13 regions. Geometric means for the regions vary from 0·6 to 3·3 μg g⁻¹ (dry weight) for the Barents Sea and the Northeastern Pacific coast, respectively.The averages of seven of these regions, for which reliable cadmium concentrations in seawater were available, were used to calculate a relationship between cadmium concentrations in seawater and mussel soft tissue. The relationship was highly significant: (Cd) mussel (μg g⁻¹, dry weight) = 0·074 (Cd) water (ng litre⁻¹) + 0·39 (P ≤ 0·0005).This model has been successfully applied in the context of the contamination of the Gironde estuary (France). It can also be used to define a water quality criterion for mussel maturing parks consistent with the quality criterion defined for shellfish for human consumption.     

North Pacific Tropical Water: its climatology and temporal changes associated with the climate regime shift in the 1970s

North Pacific Tropical Water (NPTW) is characterized as a subsurface salinity maximum flowing in the North Equatorial Current and is the main source of salt for the North Pacific. We briefly describe the climatological features of its formation and circulation, and then examine temporal changes in its properties associated with the climate regime shift in the 1970s. We use a variety of data, which include the repeat hydrographic sections along 130°E, 137°E, 144°E and 155°E meridians, the hydrographic data from the Hawaii Ocean Time-series, the World Ocean Atlas 1994, and available gridded data of wind stress and evaporation. The classical idea that NPTW originates from the zone of the highest sea surface salinity at 20°–30°N centered around the international date line and spreads along the isopycnal geostrophic flow patterns is confirmed. Further, it is shown that the meridional extent of NPTW along 137°E is from 10°N to 23°N on average and the highest salinity core lies at about 15°N and 24.0σ_θ, and that the portion of NPTW north (south) of about 15°N originates from the formation region west (east) of the date line. NPTW in the 137°E section changed remarkably associated with the mid-1970s regime shift. North of 15°N NPTW increased both in its salinity and thickness while to the south of 15°N only its salinity increased and its thickness remained unchanged. The westward geostrophic velocity is increased significantly in both the southern and northern parts of NPTW. The northern thickening and speedup and the southern speedup increased NPTW transport across 137°E. The changes in the thermohaline forcing such as evaporation and Ekman salt convergence in the NPTW formation region possibly contributed to the increases in salinity in the southern part of NPTW, but not to that of the northern part. On the other hand, the increased Ekman pumping accounts for the increase of the NPTW inventory and transport at 137°E. The increased salinity of NPTW at 137°E, especially its northern portion, was presumably caused by an increase in its formation rate rather than changes in the sea surface salinity in its formation region; the thicker the NPTW layer is, the saltier is the core that tends to survive the mixing processes.     

牡蛎幼虫光照实验提示复杂遗传背景下基因互作的多样性

为研究光照对牡蛎幼虫生长成活率的影响,使用6组牡蛎幼虫家系,前三组为长牡蛎家系(GG1、GG2、GG3),后三组为长牡蛎与葡萄牙牡蛎杂交家系(GA1、GA2、GA3),其中GG1与GA1母本相同,GG2与GA2母本相同,GG3与GA3母本相同;每个家系分别在6个光照梯度下从1日龄饲养到10日龄,然后测量记录10日龄幼虫在各个光照梯度下的壳高和成活率。结果表明,在各个光照梯度下,牡蛎幼虫的壳高都没有显著差异,长牡蛎幼虫与杂交牡蛎幼虫之间的壳高也都没有显著差异,但长牡蛎幼虫和杂交牡蛎幼虫均在58 lx的光照强度下,表现出最高的成活率,这提示牡蛎育苗生产的前10天应当保持这样的光照强度,而杂交牡蛎幼虫在269 lx和58 lx两个光照梯度下的成活率均极显著的高于长牡蛎幼虫,提示了长牡蛎与葡萄牙牡蛎之间具有亲和性并且其杂交后代存在杂种优势,也在一定程度上支持长牡蛎与葡萄牙牡蛎同属一个物种的假设。而以壳高和成活率作为指标进行聚类分析和主成分分析后发现,长牡蛎3个家系幼虫的表型比较接近,而杂交牡蛎幼虫的表型虽然具有靠近各自同母本长牡蛎幼虫的趋势,但杂交家系之间差异非常大,提示了高杂合度高异质性遗传背景下基因互作的多样性。     

Introduced Pacific oysters Crassostrea gigas in South Africa: demographic change,genetic diversity and body condition

Successful aquaculture species are often chosen for their fast growth rates and fecundity, which are also characteristics of invasive species. The Pacific oyster Crassostrea gigas, which constitutes 80% of global oyster trade, has been confirmed as invasive in 17 of the 66 countries where it is cultured. The single study of its status in South Africa reported populations in six South Coast estuaries in 2001, dropping to three sites in 2003. We resurveyed these estuaries, visited others in the Eastern and Western Cape provinces, and sampled oyster tissue for molecular analyses of population structure. Pacific oysters have disappeared from Knysna and, following our collections, possibly also from the GouKou Estuary. Between 2003 and 2012, the Breede Estuary population decreased by 87%, from an estimated 184 206 to 23 760 individuals. Within this estuary, oysters 12 km upriver had denser shells and higher body condition indices than did those within 1.4 km of the river mouth, presumably reflecting higher availability of suspended organic matter. However, low salinity over most of the species’ range in the estuary probably inhibits recruitment. New populations of Pacific oysters in the Swartkops and Kaaimans estuaries urgently require monitoring and eradication. Haplotype (h) and nucleotide (π) diversities across all oyster populations sampled (h = 0.2300 [SD 0.0595], π = 0.0006 [SD 0.0007]) were lower than those of co-occurring indigenous Cape rock oysters Striostrea margaritacea from the GouKou and Breede estuaries (h = 0.9076 [SD 0.0386], π = 0.00589 [SD 0.00347]). Pacific oysters either have been introduced to South African estuaries infrequently, or have experienced genetic bottlenecks following river floods or human exploitation, or both. Populations growing outside culture infrastructure are restricted to estuaries in the Eastern and Western Cape provinces, with no evidence of occurrence in fully marine shelf environments. Given the species’ considerable socio-economic importance, estuarine and coastal surveillance coupled with aquaculture zoning are required to integrate biodiversity and food security considerations.     

Comparison and history of Polydora websteri and P. haswelli (Polychaeta: Spionidae) as mud-blister worms in New Zealand shellfish

Shells of commercially valued bivalves in New Zealand, Crassostrea gigas, Perna canaliculus and Pecten novaezelandiae, are damaged by blister-causing Polydora polychaete species known to be close in morphology to the widely recorded oyster pest Polydora websteri Hartman. Recent New Zealand occurrences are here confirmed to relate to two species, P. websteri, and a second similar species, Polydora haswelli Blake & Kudenov, a new record for New Zealand, previously known only from Australia; the two species are described and compared. The worms have limited distributions, with P. websteri confirmed only for Pacific oysters (C. gigas) in northern New Zealand, although prior reports indicate it may also occur on scallops and have reached the northern South Island. Polydora haswelli has been found only in northern New Zealand, occurring on subtidal mussels and scallops and native oysters (Perna canaliculus, Pecten novaezelandiae, Ostrea chilensis), as well as co-existing with intertidal P. websteri on Pacific oysters. The worms are not present in Foveaux Strait O. chilensis beds, a major source of past oyster exports to Australia. The history of mud-blister worm outbreaks in Australasia is examined. While trans-Tasman exports of live oysters from New Zealand were commonplace during the nineteenth century, there is no evidence that mud-blister worms were present in New Zealand then. The earliest reports only date from the early 1970s and only from northern New Zealand, whereas a century earlier in the 1870s at least one of these pest worms had become widespread along eastern Australian coasts.     

Trace metals in the Western Pacific: temporal and spatial variability in the concentrations of Cd, Cu, Mn and Ni

Profiles of total dissolvable Cd, Cu, Mn and Ni are reported for samples collected from the southwest Pacific in 1989, from the western equatorial Pacific along 155°E at 5°S, 0° and 5°N in 1990 and 1993, and along the equator from 143°E to 152°E and in the Bismarck Sea in 1997 and 2000. Profiles of Cd along 155°E in 1990 and along the equator were essentially the same but, in 1993, Cd values at 5°N were higher by a factor of about 1.5–2 than at 5°S over the depth range 500–1500 m. Similar, but less pronounced, differences were observed for PO₄ and Ni. Cd and Ni were both strongly correlated with PO₄, and an even stronger correlation was found between Ni and Cd. The concentration of Ni did not fall below ≈2 nmolkg⁻¹, even in the nitrate-depleted waters of the western equatorial Pacific, where primary production is strongly dependent on recycled nitrogen (mainly ammonia and urea). It is proposed that this residual Ni is not bioavailable and that Ni could be biolimiting, since the metabolism of urea requires the nickel-containing enzyme urease. The impact of the Sepik River on Cd, Cu and Ni concentrations was small but elevated concentrations of Mn were observed near the Sepik River and close to the coast suggesting that the rivers and sediments on the north coast of New Guinea are a significant local source of Mn to the Bismarck Sea. Simple mass balance calculations show that the elevated levels of Mn observed in the Equatorial Undercurrent cannot be due to input from the rivers of New Guinea and they were attributed to the trapping of particulate matter due to strong current shear. A strong hydrothermal source of Mn was observed in the central Bismarck Sea.     

酸碱粗提配合超声破碎法制取可溶性长牡蛎(Crassostrea gigas)黑色素的研究

虽然牡蛎黑色素已经提取鉴定成功,但因为大部分实验需要用到黑色素的水溶液,而天然黑色素不溶于水,致使天然长牡蛎(Crassostrea gigas)黑色素的功效验证工作难以开展。本课题组探究总结出一套有效方法,对可溶性长牡蛎黑色素进行制取。首先选用酸碱法,从黑色长牡蛎中提取出天然长牡蛎黑色素,将其溶于氢氧化钠溶液中,利用超声细胞破碎仪进行处理,用盐酸中和至中性,离心取上清并干燥后得到一种黑色可溶性固体;再将该黑色固体分别用激光粒度测试仪、红外光谱仪和紫外光谱扫描仪进行检验后,发现天然长牡蛎黑色素经过超声降解处理后,颗粒粒度大幅下降,其溶解性大幅提高。红外光谱则显示出1630nm左右有明显的峰值,说明超声降解处理并未破坏真黑色素吲哚环等官能团;紫外吸光图谱的比较则显示天然长牡蛎黑色素破碎后,吸收峰仍然出现在210nm左右,但吸收值明显升高,说明超声降解法可以将难溶于水的天然长牡蛎黑色素降解为可溶于水的小颗粒可溶性黑色素,从而提高了紫外吸收值。可溶性牡蛎黑色素的制备成功对推动牡蛎黑色素的功能研究具有重要意义。     

Application of a variational inverse model to determine a wintertime circulation in the East Sea of Korea

Using a variational inverse model, a wintertime ocean circulation is obtained in the East Sea of Korea bounded by transects of 34° N, 38° N in latitude and 132° E in longitude and coastlines. The hydrographic data observed by FRDAK (Fisheries Research and Development Agency of Korea) are used for determining the vertical structure and also used as data constraints. In the current study, the model was constrained only by the geostrophic balance and bottom topography. Preliminary model results showed that the vertical distributions of temperature in February 1983 were homogeneous in the coastal region south of 35°30′ N and that the extension of cold water mass along the eastern coast of Korea was noticed in the northern part of the study area. Meandering northward flows with the scale of 150 km are also observed to be dominant in the surface layer (10–100 m).     

Seasonal variation in the reproductive activity and biochemical composition of the Pacific oyster (Crassostrea gigas) from the Marlborough Sounds,New Zealand

Reproductive cycles of the Pacific oyster Crassostrea gigas (Thunberg) from the Marlborough Sounds, New Zealand, were followed between June 1998 and January 2000. Histological examination of the gonad confirms an annual cycle with a winter inactive period followed by rapid gonad development and a single short spawning period. The population gonad index correlated with seawater temperature and changes in tissue dry weight, condition index, and biochemical components. In winter, few individuals with early gametogenic stages were present and rapid development of primary oocytes (diam. 11 μm) occurred during spring (September‐November). The developmental rate and the diameter of mature oocytes (37 μm) was similar for the 1998 and 1999 seasons. For a standard 110‐mm‐length oyster, maximal tissue body weight and condition index were recorded in December. Rapid weight loss in January was length dependent and was attributed to spawning. Temperature was the environmental variable which best correlated with the timing of gametogenesis. Food availability (phytoplankton biomass) may have been responsible for inter‐annual variations. The biochemical composition (% glycogen, lipid, protein) of separated gonad and somatic tissues were variable seasonally and annually. Gametogenesis (oocyte diameter) was associated with increased gonad protein and glycogen and a decrease in lipid concentrations. These changes are similar to those in Pacific oyster populations from other parts of the world.     

长牡蛎细胞周期调控关键基因cyclin B3 的克隆及其在性腺发育中的作用

首次在长牡蛎（Crassostrea gigas）中克隆得到细胞周期蛋白B3（cyclin B3）的cDNA 全长序列和基因组结构序列。cyclin B3 基因cDNA 全长2383 bp, 其中编码区长度为1293 bp, 编码一条含430 个氨基酸的多肽链, 氨基酸序列比对和结构域分析均表明其为其他物种cyclin...     

长牡蛎(Crassostrea gigas)微卫星多重PCR 体系构建及其在家系鉴定中的应用

筛选多态性高、特异性好、片段大小适中的10 个长牡蛎微卫星位点进行优化组合, 根据扩 增片段大小及同一荧光不重叠原则构建了两组五重PCR 体系。运用CERVUS 3.0 软件对0527 组27 个长牡蛎全同胞家系的643 个子代和0612 组27 个全同胞家系382 个子代分别进行亲权鉴定。结果 发现, 用两组微卫星五重PCR 鉴别时, 在0527 组和0612 组的鉴定成功率均为100%; 只用第一组微 卫星五重PCR, 可以将0527 组96%的子代和0612 组96%的子代鉴定到亲本; 只用第二组微卫星五 重PCR, 可以将0527 组97%的子代和0612 组95%的子代鉴定到亲本。本研究中筛选出的两组微卫 星五重PCR 体系在两组家系中的鉴定效率均较高, 可以快速有效地将子代个体鉴定至所属父母本, 在长牡蛎家系鉴定中具有很好的应用价值。     

Genetic characterisation of oyster populations along the north-eastern coast of Tunisia

The taxonomy of oysters has been traditionally based on characteristics of the shell. More recently, the analysis of protein and DNA polymorphism has provided a means to overcome difficulties in distinguishing the different species of oysters based solely on shell morphology. In order to identify oysters of the Tunisian north-east coast, we sequenced a 16S rRNA mitochondrial fragment from 68 oysters sampled from the Bizert Lagoon and the Gulf of Hammamet in northern Tunisia. Comparison of oyster 16S rRNA sequences available in GenBank showed the presence of both Ostreola stentina and Crassostrea gigas in our samples, which could not be detected on the basis of shell morphology only. These data confirmed that C. gigas, a non-native species, is now naturalised in the Bizert Lagoon. Furthermore, significant levels of genetic divergence among the 16S rRNA haplotypes from O. stentina populations have been observed. Specifically, the haplotypes found in the Bizert Lagoon are closer to those previously detected from Morocco and Portugal, whereas those in the Gulf of Hammamet are closer to the haplotypes from the south of Tunisia, with a divergence ranging from 2.1% to 2.7% between the northern and eastern Tunisian haplotypes. The possible impact of the Siculo-Tunisian Strait on the phylogeography of O. stentina is discussed.     

Deep-circulation flow at mid-latitude in the western North Pacific

Direct current measurements with five moorings at 27–35°N, 165°E from 1991 to 1993 and with one mooring at 27°N, 167°E from 1989 to 1991 revealed temporal variations of deep flow at mid-latitude in the western North Pacific. The deep-circulation flow carrying the Lower Circumpolar Deep Water from the Southern Ocean passed 33°N, 165°E northwestward with a high mean velocity of 7.8 cm s⁻¹ near the bottom and was stable enough to continue for 4–6 months between interruptions of 1- or 2-months duration. The deep-circulation flow expanded or shifted intermittently to the mooring at 31°N, 165°E but did not reach 35°N, 165°E although it shifted northward. The deep-circulation flow was not detected at the other four moorings, whereas meso-scale eddy variations were prominent at all the moorings, particularly at 35°N and 29°N, 165°E. The characteristics of current velocity and dissolved oxygen distributions led us to conclude that the deep-circulation flow takes a cyclonic pathway after passing through Wake Island Passage, passing 24°N, 169.5–173°E and 30°N, 168–169°E northward, proceeds northwestward around 33°N, 165°E, and goes westward through the south of the Shatsky Rise. We did not find that the deep-circulation flow proceeded westward along the northern side of the Mid-Pacific Seamounts and eastward between the Hess Rise and the Hawaiian Ridge toward the Northeast Pacific Basin.     

Seasonal variability in somatic and reproductive investment of the bivalve Scrobicularia plana (da Costa, 1778) along a latitudinal gradient

Monthly investment in soma and gonads in the bivalve Scrobicularia plana is described for three populations along its distributional range: Minho estuary, Portugal; Westerschelde estuary, The Netherlands and Buvika estuary, Norway. Seasonal cycles in body mass (BMI), somatic mass (SMI) and gonadal mass (GMI) indices were observed for all populations. In Portugal, BMI and SMI peaked in mid-autumn, while in The Netherlands both indices were at their highest in mid-spring. Norway showed a different pattern with two distinct peaks: one in mid-autumn and a second peak in spring. GMI reached maximum values in July in Portugal and Netherlands and in June in Norway. Overall, mean BMI and SMI were lower in Portugal while mean GMI was lower in Norway. The spawning period lasted the whole summer in Portugal, but was shorter (only two months) in The Netherlands and Norway. The reproductive investment in The Netherlands was significantly higher than in Portugal and Norway, with the lowest values being observed in Norway. Differences in annual cycles between populations were attributed to environmental factors, namely temperature and food availability. Temperature seems important in shaping the reproductive pattern with more northern populations showing shorter reproductive periods starting later in the year, and a lower reproductive output. In addition, winter water temperatures can explain the lower mean body and somatic mass values observed in Portugal. Food availability influenced the physiological performance of the species with peaks in somatic mass coinciding with phytoplankton blooms. This relation between physiological performance and environmental factors influences S. plana distribution, densities and even survival, with natural consequences on its commercial importance.     

基于RNA-seq数据分析长牡蛎(Crassostrea gigas)天然免疫的可变剪接事件

大部分无脊椎动物缺乏基于经典抗体和记忆细胞的适应性免疫, 因而天然免疫在无脊椎动物免疫防御中发挥不可或缺的作用。可变剪接正是产生天然免疫多样性和特异性的重要途径。牡蛎(Crassostrea)是全球范围内的大宗养殖贝类和我国产量最高的海水养殖贝类, 理解其天然免疫系统的多样性和特异性对牡蛎病害防治和养殖业健康可持续发展至关重要。通过对不同病原诱导以及诱导后不同时间的转录组进行生物信息分析, 系统地研究了长牡蛎天然免疫应激反应的可变剪接事件。发现在弧菌诱导下可变剪接事件的总数显著增加, 表明弧菌的感染会诱导长牡蛎可变剪接事件的产生。对病原诱导后可变剪接体的组成类型及表达量显著变化的基因的功能富集分析, 表明免疫系统相关功能被显著富集, 病原感染不同阶段以及不同病原感染后可变剪接体的组成类型和表达量均不一致, 表明长牡蛎免疫系统可通过可变剪接产生免疫响应的特异性和多样性。研究结果为长牡蛎等无脊椎动物天然免疫多样性和特异性提供了典型实例, 也为长牡蛎病害防御提供了理论支撑。