Informing policy to protect coastal coral reefs: Insight from a global review of reducing agricultural pollution to coastal ecosystems

The continuing degradation of coral reefs has serious consequences for the provision of ecosystem goods and services to local and regional communities. While climate change is considered the most serious risk to coral reefs, agricultural pollution threatens approximately 25% of the total global reef area with further increases in sediment and nutrient fluxes projected over the next 50 years. Here, we aim to inform coral reef management using insights learned from management examples that were successful in reducing agricultural pollution to coastal ecosystems. We identify multiple examples reporting reduced fluxes of sediment and nutrients at end-of-river, and associated declines in nutrient concentrations and algal biomass in receiving coastal waters. Based on the insights obtained, we recommend that future protection of coral reef ecosystems demands policy focused on desired ecosystem outcomes, targeted regulatory approaches, up-scaling of watershed management, and long-term maintenance of scientifically robust monitoring programs linked with adaptive management.     

Coral reef health and effects of socio-economic factors in Fiji and Cook Islands

This research focuses on coral reef health in the South Pacific region, an area of high global coral diversity. Coral reef health surrounding four island case studies in the Cook Islands and Fiji have been assessed in areas that have not been previously surveyed. This study compares four islands with barrier and fringing reefs that have different levels of economic development, population pressure, land-use practices, and marine management practices. This interdisciplinary research methodology includes both ecological and social data collection to further understanding of human environment interactions. In comparing the reefs with different socio-economic factors, this research shows that reefs with traditional systems of resources management are healthier, population pressure is not the main factor causing the demise of the reefs and agro-industry is the main industry causing the degradation of the reef in these four South Pacific Islands. In addition, researchers need to use a whole reef perspective to examine coral reef health.     

Sewage impacts coral reefs at multiple levels of ecological organization

Against a backdrop of rising sea temperatures and ocean acidification which pose global threats to coral reefs, excess nutrients and turbidity continue to be significant stressors at regional and local scales. Because interventions usually require local data on pollution impacts, we measured ecological responses to sewage discharges in Surin Marine Park, Thailand. Wastewater disposal significantly increased inorganic nutrients and turbidity levels, and this degradation in water quality resulted in substantial ecological shifts in the form of (i) increased macroalgal density and species richness, (ii) lower cover of hard corals, and (iii) significant declines in fish abundance. Thus, the effects of nutrient pollution and turbidity can cascade across several levels of ecological organization to change key properties of the benthos and fish on coral reefs. Maintenance or restoration of ecological reef health requires improved wastewater management and run-off control for reefs to deliver their valuable ecosystems services.     

Management of coral reefs: we have gone wrong when neglecting active reef restoration

The current best management tools employed in coral reefs worldwide do not achieve conservation objectives as coral reefs continue to degrade. Even improved reef management helps, at best, to reduce the degradation pace, whereas the worsening global changes foretell a dismal fate for coral reefs. The assertion made here is that the prospect for reefs' future is centered on omnipresent acceptance of restoration, an 'active' management instrument. A recent promising such tool is the 'gardening concept', influenced by the well-established scientific discipline of terrestrial forestation. This notion is supported by a two-step protocol. The first step entails rearing coral "seedlings", in specially designed underwater nurseries, to transplantable size, before applying the second step, out-planting into damaged areas of the nursery-farmed coral colonies. Only the establishment of large-scale nurseries and transplantation actions, together with conventional management tools, will be able to cope with extensive reef degradation on the global scale.     

Is proximity to land-based sources of coral stressors an appropriate measure of risk to coral reefs? An example from the Florida Reef Tract

Localized declines in coral condition are commonly linked to land-based sources of stressors that influence gradients of water quality, and the distance to sources of stressors is commonly used as a proxy for predicting the vulnerability and future status of reef resources. In this study, we evaluated explicitly whether proximity to shore and connections to coastal bays, two measures of potential land-based sources of disturbance, influence coral community and population structure, and the abundance, distribution, and condition of corals within patch reefs of the Florida Reef Tract. In the Florida Keys, long-term monitoring has documented significant differences in water quality along a cross-shelf gradient. Inshore habitats exhibit higher levels of nutrients (DIN and TP), TOC, turbidity, and light attenuation, and these levels decrease with increasing distance from shore and connections to tidal bays. In clear contrast to these patterns of water quality, corals on inshore patch reefs exhibited significantly higher coral cover, higher growth rates, and lower partial mortality rates than those documented in similar offshore habitats. Coral recruitment rates did not differ between inshore and offshore habitats. Corals on patch reefs closest to shore had well-spread population structures numerically dominated by intermediate to large colonies, while offshore populations showed narrower size-distributions that become increasingly positively skewed. Differences in size-structure of coral populations were attributed to faster growth and lower rates of partial mortality at inshore habitats. While the underlying causes for the favorable condition of inshore coral communities are not yet known, we hypothesize that the ability of corals to shift their trophic mode under adverse environmental conditions may be partly responsible for the observed patterns, as shown in other reef systems. This study, based on data collected from a uniform reef habitat type and coral species with diverse life-history and stress-response patterns from a heavily exploited reef system, showed that proximity to potential sources of stressors may not always prove an adequate proxy for assigning potential risks to reef health, and that hypothesized patterns of coral cover, population size-structure, growth, and mortality are not always directly related to water quality gradients.     

Management of coral reefs: where we have gone wrong and what we can do about it

Globally, our current management of coral reefs is inadequate and becoming more so as we place new and greater stresses on these ecosystems. The future looks very dim, and yet we have the capacity to do a far more effective job of reef management if we want to. Making substantial improvements to the condition of these enormously valuable coastal marine ecosystems does not require new scientific discoveries, but a new commitment to apply the knowledge we already possess to manage our impacts so that sustainability becomes possible.     

Water quality and coral bleaching thresholds: Formalising the linkage for the inshore reefs of the Great Barrier Reef, Australia

The threats of wide-scale coral bleaching and reef demise associated with anthropogenic climate change are widely known. Here, the additional role of poor water quality in lowering the thermal tolerance (i.e. bleaching ‘resistance’) of symbiotic reef corals is considered. In particular, a quantitative linkage is established between terrestrially-sourced dissolved inorganic nitrogen (DIN) loading and the upper thermal bleaching thresholds of inshore reefs on the Great Barrier Reef, Australia. Significantly, this biophysical linkage provides concrete evidence for the oft-expressed belief that improved coral reef management will increase the regional-scale survival prospects of corals reefs to global climate change. Indeed, for inshore reef areas with a high runoff exposure risk, it is shown that the potential benefit of this ‘local’ management imperative is equivalent to ∼2.0-2.5 °C in relation to the upper thermal bleaching limit; though in this case, a potentially cost-prohibitive reduction in end-of-river DIN of >50-80% would be required. An integrated socio-economic modelling framework is outlined that will assist future efforts to understand (optimise) the alternate tradeoffs that the water quality/coral bleaching linkage presents.     

Introductory perspective on the COREF Project

Abstract Coral reefs are tropic to subtropic, coastal ecosystems comprising very diverse organisms. Late Quaternary reef deposits are fossil archives of environmental, tectonic and eustatic variations that can be used to reconstruct the paleoclimatic and paleoceanographic history of the tropic surface oceans. Reefs located at the latitudinal limits of coral‐reef ecosystems (i.e. those at coral‐reef fronts) are particularly sensitive to environmental changes – especially those associated with glacial–interglacial changes in climate and sealevel. We propose a land and ocean scientific drilling campaign in the Ryukyu Islands (the Ryukyus) in the northwestern Pacific Ocean to investigate the dynamic response of the corals and coral‐reef ecosystems in this region to Late Quaternary climate and sealevel change. Such a drilling campaign, which we call the COREF (coral‐reef front) Project, will allow the following three major questions to be evaluated: (i) What are the nature, magnitude and driving mechanisms of coral‐reef front migration in the Ryukyus? (ii) What is the ecosystem response of coral reefs in the Ryukyus to Quaternary climate changes? (iii) What is the role of coral reefs in the global carbon cycle? Subsidiary objectives include (i) the timing of coral‐reef initiation in the Ryukyus and its causes; (ii) the position of the Kuroshio current during glacial periods and its effects on coral‐reef formation; and (iii) early carbonate diagenetic responses as a function of compounded variations in climate, eustacy and depositional mineralogies (subtropic aragonitic to warm‐temperate calcitic). The geographic, climatic and oceanographic settings of the Ryukyu Islands provide an ideal natural laboratory to address each of these research questions.     

Assessing coral reef health across onshore to offshore stress gradients in the US Virgin Islands

Managing the effects of anthropogenic disturbance on coral reefs is highly dependant on effective strategies to assess degradation and recovery. We used five years of field data in the US Virgin Islands to investigate coral reef response to a potential gradient of stress. We found that the prevalence of old partial mortality, bleaching, and all forms of coral health impairment (a novel category) increased with nearshore anthropogenic processes, such as a five-fold higher rate of clay and silt sedimentation. Other patterns of coral health, such as recent partial mortality, other diseases, and benthic cover, did not respond to this potential gradient of stress or their response could not be resolved at the frequency or scale of monitoring. We suggest that persistent signs of disturbance are more useful to short-term, non-intensive (annual) coral reef assessments, but more intensive (semi-annual) assessments are necessary to resolve patterns of transient signs of coral health impairment.     

Macroalgae in the coral reefs of Eilat (Gulf of Aqaba, Red Sea) as a possible indicator of reef degradation

The current state of health of the coral reefs in the northern Gulf of Aqaba (Red Sea), notably the Eilat reefs, is under debate regarding both their exact condition and the causes of degradation. A dearth of earlier data and unequivocal reliable indices are the major problems hinder a clear understanding of the reef state. Our research objective was to examine coral-algal dynamics as a potential cause and an indication of reef degradation. The community structure of stony corals and algae along the northern Gulf of Aqaba reveal non-seasonal turf algae dominancy in the shallow Eilat reefs (up to 72%), while the proximate Aqaba reefs present negligible turf cover (<6%). We believe that turf dominancy can indicate degradation in these reefs, based on the reduction in essential reef components followed by proliferation of perennial turf algae. Our findings provide further evidence for the severe state of the Eilat coral reefs.     

Marine debris accumulation in the Northwestern Hawaiian Islands: an examination of rates and processes

Large amounts of derelict fishing gear accumulate and cause damage to shallow coral reefs of the Northwestern Hawaiian Islands (NWHI). To facilitate maintenance of reefs cleaned during 1996-2005 removal efforts, we identify likely high-density debris areas by assessing reef characteristics (depth, benthic habitat type, and energy regime) that influence sub-regional debris accumulation. Previously cleaned backreef and lagoonal reefs at two NWHI locations were resurveyed for accumulated debris using two survey methods. Accumulated debris densities and weights were found to be greater in lagoonal reef areas. Sample weight-based debris densities are extrapolated to similar habitats throughout the NWHI using a spatial 'net habitat' dataset created by generalizing IKONOS satellite derivatives for depth and habitat classification. Prediction accuracy for this dataset is tested using historical debris point data. Annual NWHI debris accumulation is estimated to be 52.0 metric tonnes. For planning purposes, individual NWHI atolls/reefs are allotted a proportion of this total.     

A relic coral fauna threatened by global changes and human activities, Eastern Brazil

Coral species composition of drilled cores from emergent bank reefs, and coral cover of the surface of old and living reefs located along the coast of the state of Bahia, Eastern Brazil, revealed that there is a marked change in the occurrence of the major building coral species in different time intervals of the reef structure, as well as in the living surface of reefs located in two different geographical sites. Holocene core sections from two reef areas (12 degrees 40'S-38 degrees 00'W and 18 degrees 00'S-39 degrees 00'W) have as major reef builders, on its topmost core interval (3 to 4 ky old), the endemic coral Mussismilia braziliensis Verrill, 1868, which also dominate on the 2.5-3.5 ky old surfaces of truncated reef tops. At the base of the cores (the 2m lower interval, older than 4 ky BP), another endemic coral Mussismilia harttii Verrill, 1868 is the dominant reef component. The relative abundance of M. braziliensis on the living surfaces of shallow reefs from both areas, shows that in the southern area, it is up to 98% on reefs located 60 km off the coast, in depths between 3 and 4m, but do not exceed 1.3% on the surface of the northern reefs located 1-2 km off the coast in depths 4-5m. The Holocene falling sea level that occurred along the coast of Brazil since 5.1 ky BP, causes an increasing runoff into the area of coastal reefs. This phenomenon may have affected the nearshore reef building fauna, replacing a more susceptive coral fauna with one better adapted to low light levels and higher sediment influx. The high turbidity associated with early Holocene shelf flooding, should also be responsible for the absence of M. braziliensis during the initial stages of reef buildup in Brazil. At the present time, the rapidly increasing human pressure, due to changes in land uses of the coastal zone (increasing sedimentation rate, nutrification of coastal waters, industrial pollution) and underwater practices, such as overfishing and an intense tourism, is aggravating the recovery capacity of this already naturally threatened coral community. If this situation coupled with increasing sea surface temperature persists, modern coral reef growth, in Brazil cannot be maintained and the major reef building coral species of the reefs in Bahia, a remnant endemic coral fauna will very soon appear in the list of endangered species.     

Flow across reefs or between islands, and effects on shelf-sea motions

Oscillatory (e.g., tidal) flow over and around shallow reefs and islands is considered. Overall matching conditions (between sea levels and flows across the reef) are derived, to represent reef effects in models of larger regions.Analyses include various reef forms of uniform cross-section and water depth h(x), both narrow (uniform cross-reef transport) and broad (decoupled motions on either side). Simple island chains, or reefs broken by passages conducting all the flow, are also considered.In all cases, cross-reef transport is “down” the sea-surface slope, phase-shifted by 0 to 1/4 cycle. The transport is sufficient to render broken reefs effectively transparent to tides, unless the reefs are unusually far from the coast (> 100km, say), dense (> 90%) and broad (> 25km).The matching conditions are consistent with (expected) energy losses for unforced trapped waves propagating along a continental shelf with a long-shelf reef. There is a corresponding change of phase speed, if these effects are small, as is generally so for Kelvin waves. Continental shelf waves, particularly near their maximum frequency, may be strongly retarded and damped by a shelf-edge reef.     

Century-scale records of land-based activities recorded in Mesoamerican coral cores

The Mesoamerican Reef, the second-largest barrier reef in the world, is located in the western Caribbean Sea off the coasts of Mexico, Belize, Guatemala, and Honduras. Particularly in the south, the surrounding watersheds are steep and the climate is extremely wet. With development and agricultural expansion, the potential for negative impacts to the reef from land-based runoff becomes high. We constructed annually resolved century-scale records of metal/calcium ratios in coral skeletons collected from four sites experiencing a gradient of land-based runoff. Our proxy data indicate that runoff onto the reef has increased relatively steadily over time at all sites, consistent with land use trends from historical records. Sediment supply to the reef is greater in the south, and these more exposed reefs will probably benefit most immediately from management that targets runoff reduction. However, because runoff at all sites is steadily increasing, even distal sites will benefit from watershed management.     

Remote sensing of coral reefs and their physical environment

There has been a vast improvement in access to remotely sensed data in just a few recent years. This revolution of information is the result of heavy investment in new technology by governments and industry, rapid developments in computing power and storage, and easy dissemination of data over the internet. Today, remotely sensed data are available to virtually anyone with a desktop computer. Here, we review the status of one of the most popular areas of marine remote sensing research: coral reefs. Previous reviews have focused on the ability of remote sensing to map the structure and habitat composition of coral reefs, but have neglected to consider the physical environment in which reefs occur. We provide a holistic review of what can, might, and cannot be mapped using remote sensing at this time. We cover aspects of reef structure and health but also discuss the diversity of physical environmental data such as temperature, winds, solar radiation and water quality. There have been numerous recent advances in the remote sensing of reefs and we hope that this paper enhances awareness of the diverse data sources available, and helps practitioners identify realistic objectives for remote sensing in coral reef areas.     

Fatty acid profiles of benthic environment associated with artificial reefs in subtropical Hong Kong

Artificial reefs can enhance habitat heterogeneity, especially in seabed degraded by bottom-dredging and trawling. However, the trophodynamics of such reef systems are not well understood. This study provided baseline data on trophic relationships in the benthic environment associated with artificial reefs in late spring and mid summer of subtropical Hong Kong, using fatty acid profiles as an indicator. Data from sediments collected at the reef base, materials from sediment traps deployed on top and bottom of the reefs, total particulate matter from the water column and oyster tissues from reef surface were subjected to principal component analysis. Results showed variations of fatty acid profiles in the total particulate matter, upper sediment trap and oyster tissue samples collected in the two samplings, indicating seasonal, trophodynamic changes within the reef system. The wastes produced by fish aggregating at the reefs can also contribute a source of biodeposits to the nearby benthic environment.     

Evolution of the Late Miocene atoll systems offshore Xisha Islands

Modern atolls have been studied systematically and thoroughly in the South China Sea.However,the knowledge of a paleo-atoll and related sedimentary system is very limited.Here we used the newly acquired high resolution 2D seismic data,and discovered three late Miocene atoll systems in the offshore Xisha Islands for the first time.We named them atoll system A,B,C,respectively.These three atoll systems,all developed on the horsts dominated by normal fault,consist mainly of atoll reefs,patch reefs,fore-reef slope deposits,and lagoons.On the basis of the interpreted sequence stratigraphic framework and the identification of fore-reef slope deposits,we suggested only the atoll system A continued to grow until Quaternary,and both of atoll system B and C had been drowned in Pliocene.In late Miocene,the atoll systems in the study area were most developed,either in magnitude or in maturity,which indicated late Miocene was the most flourishing period of reef builders,and this was in accordance with the drilling result of ODP Leg 184 in the South China Sea.Pliocene was an important reef drowning period in the study area,and both atoll systems B and C were drowned and hemipelagic deposits prevailed gradually.Quaternary was another reef drowning period in the study area,two large atoll reefs grown on the atoll system A were finally drowned,and hemipelagic deposits begun to drape and fill the palaeo-atoll systems.The growth and drowning of atolls are controlled mainly by tectonic subsidence in long term,but global eustatic can impact it in short term also.