Molecular phylogeny of the families Pleuronectidae and Poecilopsettidae (PISCES,Pleuronectiformes) from Korea,with a Proposal for a new classification

A new classification of the Korean pleuronectids was proposed based on a molecular phylogeny using specimens collected from Korea (including some Japanese specimens) between 2008 and 2013. A molecular phylogeny based on partial sequences of the two mitochondrial DNA regions (COI and 16S rRNA) supported the reciprocal monophyly of the three genera, Cleisthenes, Pleuronectes and Pseudopleuronectes. We also found that the genus Poecilopsetta is clearly distinct from Pleuronectidae at the family level. Therefore, the previous classification of the Korean pleuronectids should be changed as follows; two families (Pleuronectidae and Poecilopsettidae), 18 genera, and 26 species. Further research is required to resolve the taxonomic uncertainty of the five species in the genus Limanda, which clustered into two clades in our analysis.     

Annual gametogenesis and reproductive effort of the limpet <Emphasis Type="Italic">Cellana grata</Emphasis> (Gould, 1859) (Gastropoda: Nacellidae) in a rocky intertidal beach at Ulleungdo Island off the east coast of Korea

Widely distributed from the northern coast of Vietnam to the northern Japan, the limpet Cellana grata (Gould, 1859) occurs commonly on the south and east coasts of Korea. Despite their wide distribution range, few studies have investigated the annual gametogenesis and reproductive effort of C. grata. In an attempt to understand the reproductive physiology of the limpet, we investigated the annual gametogenesis and reproductive effort of C. grata from Ulleungdo Island off the east coast of Korea. Histology revealed that the gonial mitosis commenced in January, as the female exhibited small oogonia (10–40 μm) in the follicle. From March to June, the oocyte size increased dramatically, and fully mature eggs (110–170 μm in diameter) appeared in early summer. First spawning males and females were observed in July, as the surface seawater temperature (SST) reached 22.1°C. The spawning male and females could be observed until the end of December. Gonad somatic index (GSI), a ratio of gonad mass to the total tissue weight, of the male ranged from 0.6 (April) to 17.9 (July), while the female GSI varied from 1.0 (February) to 18.3 (July). GSI of male and female declined rapidly from July to August, suggesting that the major purse of the spawning at the study site was between July and August. Our study suggested that the commercial catch of C. grata during July and August must be suspended at Ulleungdo Island, in order to protect the spawning limpets, which enhances C. grata recruitment and the population.     

Temporal changes in the geographic distribution of two clam species <Emphasis Type="Italic">Meretrix lusoria</Emphasis> and <Emphasis Type="Italic">M. petechialis</Emphasis> along the coast of Japan and South Korea

The objectives of this study were to distinguish fossil specimens of Meretrix (Bivalvia, Veneridae) using discriminant score and multivariate analysis, and to examine temporal changes in the geographical distributions of M. lusoria and M. petechialis in Japan and South Korea. Fossil shells of Meretrix were collected from Miyagi, Fukui, Aichi and Kumamoto in Japan, and Gimhae, Seosan, Siheung and Ganghwa-do in South Korea. The outside of the right valve was photographed with a digital camera, and ten characteristics of the shell morphology, such as shell height and shell length, were measured using image analysis software and a digital slide caliper. The discriminant score and multivariate analysis of the shell morphology identified all of the examined fossils as M. lusoria, while living individuals collected from the western coast of South Korea were identified as M. petechialis. These results suggest that the fossil shells excavated from the western coast of South Korea are a different species from the living individuals collected from the same areas. Radioactive carbon isotopic results revealed that the ages of the four fossil shells collected from tidal flats in Ganghwa-do ranged between 3,270 ± 30 and 1,830 ± 30 Cal BP. These results suggest that M. lusoria inhabited the western coast of South Korea until at least 2,000 years ago, but was replaced by M. petechialis during the last 2,000 years. Therefore, we propose that either M. petechialis spats were introduced artificially, or planktonic larvae migrated naturally from China to the western coast of South Korea during the last 2,000 years.     

Estimation of spawning area of <Emphasis Type="Italic">Pisodonophis sangjuensis</Emphasis> Ji and Kim, 2011 (Pisces: Ophichthidae) based on leptocephali size and distribution

Pre-metamorphic leptocephali of Pisodonophis sangjuensis (n = 91, 10.4?90.2 mm in total length, TL) were collected in the East China Sea for the first time. Pre-metamorphic leptocephali of P. sangjuensis, which were identified using mitochondrial DNA cytochrome c oxidase subunit I gene (mtDNA COI), are characterized by various combinations of morphological characters: 8 moderate to pronounced gut loops with the kidney terminating on the 6-7th loops; and 8 subcutaneous pigment patches on the tail just ventral to the notochord. Pisodonophis sangjuensis leptocephali were more numerously collected offshore than inshore around Jeju Island. The smallest leptocephali (< 15.0 mm TL) were collected from the south far from Jeju Island, and the largest leptocephali (> 100.0 mm TL) were collected from around Jeju Island and the southern coast of Korea. Our findings indicate that P. sangjuensis spawns offshore south of Jeju Island that is an area associated with high water temperature, and then the hatched leptocephali are transported to Jeju Island or the southern coast of Korea by the Tsushima Warm Current.     

Molecular phylogeny of the genus <Emphasis Type="Italic">Chondracanthus</Emphasis> (Rhodophyta), focusing on the resurrection of <Emphasis Type="Italic">C. okamurae</Emphasis> and the description of <Emphasis Type="Italic">C. cincinnus</Emphasis> sp. nov.

Determining the taxonomic status of the red algal genus Chondracanthus based on morphological characters is challenging due to the similarity and high degree of plasticity of the thallus. Since the taxonomic history of several Chondracanthus species remains unclear, we analyzed the plastid rbcL and mitochondrial COI genes of the specimens from Korea and Japan, in combination with morphological observations, to examine their phylogenetic relationships. Our results confirmed the distinction of C. okamurae, which is separated from C. intermedius, and identified a novel species, C. cincinnus sp. nov. Three species (C. okamurae, C. intermedius and C. cincinnus) formed a monophyletic clade with C. tenellus. C. okamurae is distinguished by linear, narrow, cylindrical to compressed, slightly recurved axes, and a high-intertidal to subtidal distribution. It was collected from Korea and Japan, while C. intermedius was identified from Japan only. A new species, Chondracanthus cincinnus sp. nov., is characterized by linear, compressed, strongly recurved axes, and a low-intertidal to subtidal distiribution. Based on the molecular phylogeny using rbcL and COI data, we herein resurrect C. okamurae as a distinct species and identify C. cincinnus as a new species.     

Morphological identification of <Emphasis Type="Italic">Alexandrium</Emphasis> species (Dinophyceae) from Jinhae-Masan Bay,Korea

Outbreaks of paralytic shellfish poisoning (PSP) and dense blooms caused by Alexandrium species in Jinhae-Masan Bay, Korea have been nearly annual events for many years. However, excluding some Alexandrium species responsible for PSP, there are no critical reports on the morphology of Alexandrium species in this bay. To identify the Alexandrium species based on detailed morphological features, vegetative cells collected water samples and established by the incubation of resting cysts isolated from sediment trap samples were analyzed. Four species of Alexandrium were identified: Alexandrium affine, A. fundyense, A. catenella, and A. insuetum. Morphological features of these species were basically consistent with those outlined in previous studies. However, the ventral pore and the connecting pore on the sulcal plate, which have been accepted as diagnostic characteristics for the identification of A. fundyense and A. catenella, need to be reevaluated, indicating that useful morphological features for identifying these two species should be recommended to avoid confusion in the classification of species in genus Alexandrium.     

Acoustic monitoring using bamboo set net in the Southern Sea of Korea

High-temporal resolution profiles of acoustic backscatter were collected from a traditional bamboo set net along the coast of the Southern Sea, Korea, using sideward-looking multi-beam imaging sonar. These data were used to examine the impact of variations in tidal cycles and current speeds on the bamboo set net. The relatively high influx of fish during the nighttime compared to the low influx and high outflux of fish during the daytime suggests visual avoidance of the net by the fish during the daytime. The observed diel variation in the captured fish flux was significantly correlated with the current speed (day: r = 0.35, p = 0.002, night: r = 0.60, p < 0.001). The ratio of influx and outflux of fish, and current speed were correlated in a linear relationship (day: r = 0.45, p < 0.001; night: r = 0.56, p < 0.001). The fish activity of those inhabiting the bamboo set nets appears to be greatly influenced by day-night differences and current speed. The present study enhances understanding of fish behavior via utilization of a bamboo set net in the coastal zone.     

A new species of the genus <Emphasis Type="Italic">Ammonicera</Emphasis> (Prosobranchia,Omalogyridae) in a coralline algae community from Jeju Island,off the south coast of Korea

A species of the genus Ammonicera Vayssière, 1893 collected from coralline algae communities in Jeju Island, South Korea, is described as a new species, A. aurea, for science. Its morphological characters are described and illustrated by SEM micrographs. This new species can be clearly distinguished from other Ammonicera species from the Pacific Ocean by the presence of a spiral cord and about 25 slightly-elevated axial ribs, resulting in about 25 nodules at intersecting points of the cord and ribs on the last whorl of the teleoconch.     

Seasonal and interannual variation in mesozooplankton community structure off Tongyeong,southeastern coast of Korea,from 2011 to 2014

Mesozooplankton community structure and environmental factors were monitored monthly at a fixed station off Tongyeong, southeastern coast of Korea, from 2011 to 2014 to better understand the variability of the mesozooplankton community in relation to changes in the marine environment. Total mesozooplankton density varied from 747 to 8,945 inds. m^-3 with peaks in summer. The surface water temperature (r = 0.338, p < 0.05) and chlorophyll-a (Chl-a) concentration (r = 0.505, p < 0.001) were parts of the factors that may have induced the mesozooplankton peaks in summer. Copepods accounted for 71% of total mesozooplankton. Total copepod density, particularly cyclopoid copepods, increased during the study period. Cumulative sum plots and anomalies of the cyclopoid copepod density revealed a change of the cyclopoid density from negative to positive in June 2013. A positive relationship between cyclopoid copepods and the Chl-a concentration (r = 0.327, p < 0.05) appeared to be one of the reasons for the increase in cyclopoids. Dominant mesozooplankton species such as Paracalanus parvus s.l., Oikopleura spp., Evadne tergestina, Cirripedia larvae, Corycaeus affinis, Calanus sinicus, and Oithona similis accounted for 60% of total mesozooplankton density. Based on cluster analysis of the mesozooplankton community by year, the seasonal distinction among groups was different in 2014 compared to other years. P. parvus s.l. and its copepodites contributed most in all groups in all four years. Our results suggest that the high Chl-a concentration since 2013 may have caused the changes in mesozooplankton community structure in the study area.     

A rapid assessment survey of invasive species of macrobenthic invertebrates in Korean waters

Introduced species are a growing and imminent threat to living marine resources in parts of the world’s oceans. The present study is a rapid assessment survey of invasive macrobenthic invertebrate species in Korean ports. We surveyed over 40 ports around Korea during the period of May 2010~March 2013. Among the sampling sites were concrete walls, docks and associated floats, bumpers, tires, and ropes which might harbor non-native species. We found 15 invasive species as follows: one Sponge, two Bryozoans, three Mollusks, one Polychaete, four Cirripedes, and four Ascidians. Three morphologically similar species, namely X. atrata, M. galloprovincialis, and X. securis were further examined for distinctions in their morphology. Although they could be reasonably distinguished based on shell shapes, significant overlap was noted so that additional analysis may be required to correctly distinguish them. Although many of the introduced species have already spread to all three coastal areas, newly arrived invasive species showed a relatively restricted range, with a serpulid polychaete Ficopomatus enigmaticus and a mytilid bivalve Xenostrobus securis found only at a few sites on the East Coast. An exception is for Balanus perforatus, which has rapidly colonized the East coast of Korea following its introduction into the region. Successful management of invasive macrobenthic invertebrates should be established in order to contain the spread of these newly arrived species.     

Morphological features,ecology, and distribution of poorly studied molluscan genera of the Colinae subfamily (Bastropoda,Buccinidae) from the far eastern seas of Russia

Data on the distribution of six genera of poorly studied buccinids of the Colinae subfamily (Neogastropoda, Buccinidae), namely, Colus Röding, 1799; Plicifusus Dall, 1902; Retifusus Dall, 1916; Aulacofusus Dall, 1918; Pararetifusus Kosuge, 1967; and Latisipo Dall, 1916, are presented. These mollusks are widely spread in the North Pacific region dwelling predominantly over loose sediments in a wide range of sea depths. Based on the morphology and contents of their digestive tracts, it is assumed that the representatives of the genera studied are predators with diverse diets. It is supposed that the increase in the dwelling depths had no significant influence on the feeding ecology of the species studied. Meanwhile, the lower abundance of preys at greater depths caused the lower population densities and modifications in the proboscis structure of selected taxa.     

An assemblage of mollusks associated with the high latitude scleractinian coral <Emphasis Type="Italic">Alveopora japonica</Emphasis> (Eguchi 1968) in Jeju Island,off the south coast of Korea

Corals reefs and communities support a wide range of flora and fauna. The complete richness and abundance of faunal communities in either coral reefs or communities is not fully understood. This is especially true for high-latitude coral communities. In this work, we carried out an analysis of an Alveopora japonica associated mollusk assemblage, in Jeju Island, Korea. A. japonica is one of the major coral species present in high abundance (88–155 colonies m^-2), with a high recruitment rate (7.8 juvenile corals m^-2 yr^-1) in Jeju Island, and may serve as a habitat for other benthic organisms. In 2012, a total number of 579 A. japonica colonies with sizes ranging between 15.1-346.7 cm² in the surface area were collected from a 1m× 10m quadrat installed at a depth of 10 m at Keumneung, on the northwest coast of Jeju Island. Numerous benthic invertebrates were found to be associated with A. japonica colonies. Twenty-seven bivalves and gastropods were identified, including a boring mytilid, Lithophaga curta, and an arcid, Barbatia stearnsi. A zonalgeographical examination of the distribution ranges of these mollusks revealed a majority of warmer water species. Our observations also showed that A. japonica may be providing a habitat to grazing gastropod, Turbo cornutus, and encrusting Spondylidae and Chamidae bivalves. A. japonica forms a coral carpet with a distinct assemblage of bivalves. It is thought that the presence of these mollusks species in the coral indicates its use as a nursery for juvenile species, a ready food supply of organic detritus, and a refuge from predators.     

Growth dynamics of the deep-water Asian eelgrass, <Emphasis Type="Italic">Zostera asiatica</Emphasis>, in the eastern coastal waters of Korea

Among the seagrasses that occur along the coast of Korea, Zostera asiatica inhabits the deepest depth; however, to date, there is limited information on its ecology. This study presents the first quantitative data on the seasonal growth dynamics of Z. asiatica in Korea. We measured seasonal growth and morphological characteristics, as well as environmental factors, including underwater irradiance, water temperature, salinity and nutrient concentrations of the water column and sediment pore water, bimonthly from July 2012 to May 2015. Underwater irradiance showed clear seasonal trends, increasing in the spring and summer and decreasing in the fall and winter, ranging from 2.4 ± 0.2 mol photons m^-2 d^-1 in November 2012 to 12.8 ± 1.3 mol photons m^-2 d^-1 in July 2014. Water temperature also followed a strong seasonal trend similar to underwater irradiance, ranging from 9.8 ± 0.1°C in January 2013 to 20.5 ± 0.2°C in September 2013. Nutrient availability fluctuated substantially, but there was no evidence of distinct seasonal variations. Shoot density, biomass, leaf productivity, and morphological characteristics of Z. asiatica exhibited significant seasonal variations: maximum values of these variables occurred in summer, and the minima were recorded in winter. Total shoot density was highest (218.8 ± 18.8 shoots m^-2) in July 2012 and lowest (106.3 ± 6.3 shoots m^-2) in January 2013. Total biomass ranged from 182.6 ± 16.9 g dry weight (DW) m^-2 in January 2015 to 310.9 ± 6.4 g DW m^-2 in July 2014.Areal leaf production was highest (4.9 ± 0.0 g DW m^-2 d^-1) in July 2012 and lowest (1.4 ± 0.2 g DW m^-2 d^-1) in January 2013. The optimum water temperature for the growth of Z. asiatica was between 16-19°C. Growth of Z. asiatica was more strongly correlated with underwater irradiance than water temperature, suggesting that light is the most important factor determining seasonality of Z. asiatica at the study site.     

Metagenomic characterization of viral communities in Goseong Bay,Korea

In this study, seawater samples were collected from Goseong Bay, Korea in March 2014 and viral populations were examined by metagenomics assembly. Enrichment of marine viral particles using FeCl₃ followed by next-generation sequencing produced numerous sequences. De novo assembly and BLAST search showed that most of the obtained contigs were unknown sequences and only 0.74% of sequences were associated with known viruses. As a result, 138 viruses, including bacteriophages (87%), viruses infecting algae and others (13%) were identified. The identified 138 viruses were divided into 11 orders, 14 families, 34 genera, and 133 species. The dominant viruses were Pelagibacter phage HTVC010P and Roseobacter phage SIO1. The viruses infecting algae, including the Ostreococcus species, accounted for 9.4% of total identified viruses. In addition, we identified pathogenic herpes viruses infecting fishes and giant viruses infecting parasitic acanthamoeba species. This is a comprehensive study to reveal the viral populations in the Goseong Bay using metagenomics. The information associated with the marine viral community in Goseong Bay, Korea will be useful for comparative analysis in other marine viral communities.     

<Emphasis Type="Italic">S</Emphasis>-wave velocity structure and tectonic implications of the northwestern sub-basin and Macclesfield of the South China Sea

Based on the optimum P-wave model, the S-wave velocity structure of a wide angle seismic profile (OBS2006-1), across the northwestern sub-basin (NWSB) and the Macclesfield, is simulated by a 2-D ray-tracing method. The results indicate the S-wave velocities in the upper and lower crust of the NWSB are 3.2–3.6 km/s and 3.6–4.0 km/s, with Vp/Vs ratios of 1.82–1.88 and 1.74–1.82, respectively, which reflect typical oceanic crust characteristics. The S-wave velocity in the upper crust of the NWSB is a little higher in the NNW segment than that in the SSE segment, while the lateral variation of Vp/Vs ratio is in the opposite. We suggest that the NWSB might have experienced asymmetrical magma flows during sea floor spreading, which may have blurred the magnetic anomaly lineation. The comparison of S-wave velocities along the northern margin of the SCS shows that the west section is different from the east section, and the northwestern margin has a non-volcanic crust structure. The S-wave structures and P-wave velocity models along the northern margin, Macclesfield and Reed Bank show that the Macclesfield might have a conjugate relationship with the Reed Bank.     

春季长江口富营养化水域浮游植物群集对冲淡水和上升流的响应

A comprehensive study on the phytoplankton standing stocks, species composition and dominant species in the eutrophic Changjiang(Yangtze River) Estuary(CE) was conducted to reveal the response of phytoplankton assemblage to Changjiang Diluted Water(CDW) and upwelling in the spring. Phytoplankton presented peak standing stocks(13.03 μg/L of chlorophyll a, 984.5×103 cells/L of phytoplankton abundance) along the surface isohaline of 25. Sixty-six species in 41 genera of Bacillariophyta and 33 species in 19 genera of Pyrrophyta were identified, as well as 5 species in Chlorophyta and Chrysophyta. Karenia mikimotoi was the most dominant species, followed by Prorocentrum dentatum, Paralia sulcata, Pseudo-nitzschia delicatissima and Skeletonema costatum. A bloom of K. mikimotoi was observed in the stratified stations, where the water was characterized by low nitrate, low phosphate, low turbidity, and specific ranges of temperature(18–22 °C) and salinity(27–32). K.mikimotoi and P. dentatum accumulated densely in the upper layers along the isohaline of 25. S. costatum was distributed in the west of the isohaline of 20. Benthonic P. sulcata presented high abundance near the bottom,while spread upward at upwelling stations. CDW resulted in overt gradients of salinity, turbidity and nutritional condition, determining the spatial distribution of phytoplankton species. The restricted upwelling resulted in the upward transport of P. sulcata and exclusion of S. costatum, K. mikimotoi and P. dentatum. The results suggested that CDW and upwelling were of importance in regulating the structure and distribution of phytoplankton assemblage in the CE and the East China Sea.     

Ring-Shaped Seismicity Structures in Southern California: Possible Preparation for Large Earthquake in the Los Angeles Basin

Some characteristics of seismicity in Southern California are studied. It is found that ring-shaped seismicity structures with threshold magnitudes M_th of 4.1, 4.1, and 3.8 formed prior to three large (M _w > 7.0) earthquakes in 1992, 1999, and 2010, respectively. The sizes of these structures are several times smaller than for intracontinental strike-slip events with similar magnitudes. Two ring-shaped structures are identified in areas east of the city of Los Angeles, where relatively large earthquakes have not occurred for at least 150 years. The magnitudes of large events which can occur in the areas of these structures are estimated on the basis of the previously obtained correlation dependence of ring sizes on magnitudes of the strike-slip earthquakes. Large events with magnitudes of M _w = 6.9 ± 0.2 and M _w = 8.6 ± 0.2 can occur in the area to the east of the city of Los Angeles and in the rupture zone of the 1857 great Fort Tejon earthquake, respectively. We believe that ring-structure formation, similarly to the other regions, is connected with deep-seated fluid migration.     

Features of the atmospheric boundary layer block for three versions of the WAM wind wave model

The estimated characteristics of the atmospheric boundary layer, obtained by the simulation of wind wave fields using three versions of the WAM numerical model are compared with the well-known empirical dependences of drag coefficient C _d on wind speed U ₁₀ and wave age A, as well as with the dependence of dimensionless roughness height z _n on inverse wave age u*/с р. Calculations carried out for several years in the areas of the Pacific and Indian oceans, based on the ERA-interim and CFSR wind reanalyses have shown good agreement between the model and empirical dependences C _d (U ₁₀) and C _d (A). The range of estimated variability for z _n (u*/с _р ) has been found to be significantly less than empirical. It has been also found that estimated values of wind speed U _10W (t) are overestimated from 5 to 10% in all versions of WAM models compared with the input wind reanalysis U _10R (t) at the moments of appearance maximum values of wind U _10R (t). The reasons for the established features of the WAM model and their dependence on the model version are discussed.     

Features of the spatial distribution of phytoplankton in Nhatrang Bay of the South China Sea during the rainy season

The species composition, phytoplankton abundance, and relative yield of the variable fluorescence (F _v /F _m ) were determined in the mesotrophic Nhatrang Bay in October–November of 2004. The species diversity (250 taxonomic units) and heterogeneity of the phytoplankton structure were high. With respect to the number of species and their abundance, diatoms prevailed. In selected parts of the bay, dinoflagellates dominated. The mean biomass in the water column under 1 m² (B _t ) varied from 2.3 to 64.4 mg C/m³ being 31.0 mg C/m³ on average. The values of B _t were the lowest at the stations nearest to the river mouth. Seaward, B _t increased. The values of B _t increased with depth at some stations and decreased at others. In the surface sea layers, the biomass was lower than that in the underlying waters. The values of F _v /F _m ranged from 0.10 to 0.64 (at a mean value of 0.49). The lowest values of F _v /F _m were observed in the area close to the seaport. Over the greater part of the bay, the values of F _v /F _m were higher than 0.47. Such values are indicative of the relatively high potential photosynthetic activity of the phytoplankton. The abundance and species diversity were higher than those in the dry season (March–April).