Eddy-resolving ocean circulation in the Asian-Australian region inferred from an ocean reanalysis effort

The first global ocean reanalysis with focus on the Asian-Australian region was performed for the period October 1992 to June 2006. The 14-year experiment assimilated available observations of altimetric sea-level anomaly, satellite SST and quality-controlled in situ temperature and salinity profiles from a range of sources, including field surveys and the Argo float array. This study focuses on dominant circulation patterns in the South-East Asian/Australian region as simulated by an eddy-resolving and data-assimilating ocean general circulation model. New estimates of the ocean circulation are provided which are largely in agreement with the limited number of observations. Transports of key currents in the region are as follows: The total (top-to-bottom) annual mean Indonesian Throughflow transport and its standard deviation are 9.7 ± 4.4 Sv from the Pacific to the Indian Ocean with a minimum in January (6.6 Sv) and a maximum in April (12.3 Sv). The Leeuwin Current along the west coast of Australia is dominated by eddy structures with a mean southward transport of 4.1 ± 2.0 Sv at 34°S. Along the southern coast of Australia a narrow shelf edge current known as the South Australian Current advects 4.5 ± 2.6 Sv eastward at 130°E. The South Australian Current converges east of Tasmania with the eddy-rich extension of East Australian Current. At 32°S this current transports 36.8 ± 18.5 Sv southward. A dominating feature of the circulation between north-eastern Australia and Papua-New Guinea is the strong and quasi-permanent Coral Sea Gyre. This gyre is associated with the highly variable Hiri Current which runs along the south coast of Papua-New Guinea and advects 8.2 ± 19.1 Sv into the Western Pacific Ocean. All of these transport estimates are subject to strong eddy variability.     

SeaWiFS retrievals of chlorophyll in Chesapeake Bay and the mid-Atlantic bight

This paper presents three years (1998–2000) of chlorophyll a (chl a) data from the Sea-viewing Wide Field-of-view Sensor (SeaWiFS) for Case 2 waters of Chesapeake Bay and the middle Atlantic bight (MAB) to describe phytoplankton dynamics on seasonal to interannual time scales. We used extensive data on inherent and apparent optical properties in conjunction with satellite retrievals to: (1) characterize the bio-optical properties of the study area relevant to processing and interpreting SeaWiFS data; (2) test the applicability of the SeaWiFS bio-optical algorithm (OC4v.4) for the estuarine and coastal waters; (3) evaluate the accuracy of the SeaWiFS remote sensing reflectance (R_RS) and chl a products on regional and seasonal bases using in situ observations. The characteristically strong absorption by chromophoric dissolved organic matter (a_cdom) and non-pigmented particulate matter (a_d) in estuarine and coastal waters contributed to overestimates of chl a using OC4v.4 applied to in situ radiances for the Bay (mean ratio 1.42±1.20) and the MAB (2.60±1.36). Values of R_RS from SeaWiFS in the blue region of the spectrum were low compared to in situ R_RS, suggesting that uncertainties remain in atmospheric correction. Direct comparisons of SeaWiFS retrievals of chl a with in situ chl a for the Bay showed larger biases and uncertainties (mean ratio 1.97±1.85) than for chl a estimated from OC4v.4 applied to in situ R_RS. The larger biases were attributed to errors in SeaWiFS radiances and the larger uncertainties to time-space “aliasing” of satellite observations and in situ measurements. To reduce the time differences between SeaWiFS and in situ data, we compared chl a obtained from continuous underway fluorometric measurements on selected ship tracks to SeaWiFS chl a and showed that SeaWiFS captured phytoplankton dynamics in much of the Bay. The agreement of SeaWiFS chl a with in situ chl a was strongest in the mid- (regions 3, 4) to lower Bay (regions 1, 2), and deteriorated toward the upper Bay (regions 5, 6), in part due to a reduction of sensitivity and an increase of noise for SeaWiFS products in the highly absorbing, low R_RS waters of the upper Bay. A three-year time-series of SeaWiFS and in situ data showed that SeaWiFS accurately and reliably captured seasonal and interannual variability of chl a associated with variations of freshwater flow. Significant short-term variability of chl a in summer that was unresolved with shipboard data was detected in the SeaWiFS time-series and the implications are discussed. The overall performance of SeaWiFS in the mid- to lower Bay and the MAB, combined with high spatial (∼1 km²) and temporal (∼100 clear scenes per year) resolution, indicate current SeaWiFS products are valuable for quantifying seasonal to interannual variability of chl a in estuarine and coastal waters.     

Partitioning particulate absorption coefficient into contributions of phytoplankton and nonalgal particles: A case study in the northern South China Sea

We measured the absorption coefficients of suspended particles (a_p(λ)) during three cruises from coastal waters to open ocean in the northern South China Sea (NSCS). The absorption contributions of phytoplankton (a_ph(λ)) and nonalgal particles (a_NAP(λ)) were determined using the methanol extraction method. Based on the dataset of about 360 samples, we examined the spectral relationships of the particle absorption coefficients. The results show that a_p(λ) spectra are well linearly correlated with a_p(443) over the wavebands between 420–650 nm; a_ph(λ) could be well expressed as the second-order quadratic equations of a_ph(443) among the blue-green wavebands, and a_NAP(λ) follows the general exponential function. Based on these spectral relationships, a model was proposed for partitioning the total particulate absorption coefficients into the contributions of phytoplankton and nonalgal particles using the nonlinear optimization method. The model was validated by comparing the computed results with in situ absorption coefficients. In some wavebands, such as 412 nm, 443 nm, 490 nm and 683 nm, we obtained good correlations with the percentage root mean square error (RMSE) values being controlled within 25% and the slopes being closer to 1.0. For samples from coastal waters, the discrepancy was a little large, which might be due to the higher absorption contributions from certain pheopigments. Overall, this model provides us much insight into phytoplankton absorption retrieval from in situ measurements and remote sensing ocean color data.     

Springtime coupling between chlorophyll a, sea ice and sea surface temperature in Disko Bay, West Greenland

Alterations in sea ice and primary production are expected to have cascading influences on the food web in high Arctic marine ecosystems. This study spanned four years and examined the spring phytoplankton production bloom in Disko Bay, West Greenland (69°N, 53°W) (using chlorophyll a concentrations as a proxy) under contrasting sea ice conditions in 2001 and 2003 (heavy sea ice) and 2002 and 2004 (light sea ice). Satellite-based observations of chlorophyll a, sea ice and sea surface temperature were used together with in situ depth profiles of chlorophyll a fluorescence collected at 24 sampling stations along the south coast of Disko Island (5-30 km offshore) in May 2003 and 2004. Chlorophyll a and sea surface temperatures were also obtained from the Moderate Resolution Imaging Spectroradiometer (MODIS: EOS-Terra and AQUA satellites) between March 2001 and July 2004. Daily SMMR/SSMI sea ice data were obtained in the same years. An empirical regional algorithm was developed to calibrate ratios of remotely sensed measurements of water leaving radiance with in situ chlorophyll a fluorescence. The optimal integration depth was 0-4 m, explaining between 70% and 91% of the variance. The spatial development of the phytoplankton bloom showed that the southwestern corner of the study area had the earliest and the largest spring phytoplankton bloom. The eastern part of Disko Bay, influenced by meltwater outflow from the glaciers, shows no signs of an early phytoplankton bloom and followed the general pattern of an accelerated bloom soon after the disappearance of sea ice. In all four years the coupling between phytoplankton and sea ice was bounded by average open water between 50% and 80%, likely due to the combined availability of light and stable open water. The daily incremental growth in both mean chlorophyll a density (chlorophyll a per volume water, μg l⁻¹) and abundance (density of chlorophyll a extrapolated to ice free areas, tons) estimated by linear regression (chlorophyll a vs. day) between 1 April and 15 May was highest in 2002 and 2004 (light ice years) and lowest in 2001 and 2003 (heavy ice years). In years with late sea ice retreat the chlorophyll a attained only slightly lower densities than in years with early sea ice retreat. However, the abundance of chlorophyll a in light ice years was considerably larger than in heavy ice years, and there was an obvious effect of more open water for light-induced stimulation of primary production. This observation demonstrates the importance of estimating chlorophyll a abundance rather than density in sea ice covered areas. This study also presents the first regional calibration of MODIS chlorophyll a data for Arctic waters.     

Phytoplankton pigments,functional types,and absorption properties in the Delagoa and Natal Bights of the Agulhas ecosystem

An investigation of pigments, phytoplankton types and absorption characteristics was conducted in the Delagoa and Natal Bights during late winter and spring in the southwest Indian Ocean. The study demonstrated that small flagellates dominated the phytoplankton communities in both bights and were ubiquitous across a temperature range of 18–24 °C. Diatoms were dominant in patches of cool water (<22 °C) related to upwelling processes and were associated with elevated levels of phytoplankton biomass, while prokaryotes were observed to increase in warm waters >22 °C. Absorption coefficients varied closely with variations in chlorophyll a and specific coefficients were lower for diatoms compared to flagellates. Chlorophyll-specific coefficients also provided useful information on the level of pigment packaging and were related to the proportion of chlorophylls and carotenoids in the pigment pool.     

Coloured dissolved organic matter (CDOM) in Southern North Sea waters: Optical characterization and possible origin

The variability and origin of the Coloured Dissolved Organic Matter (CDOM) were studied in the Belgian coastal and adjacent areas including offshore waters and the Scheldt estuary, through the parameters: absorption at 375 nm, a_CDOM(375), and the slope of the absorption curve, S. a_CDOM(375) varied between 0.20 and 1.31 m⁻¹ and between 0.97 and 4.30 m⁻¹ in the marine area and Scheldt estuary, respectively. S fluctuated between 0.0101 and 0.0203 nm⁻¹ in the marine area and between 0.0167 and 0.0191 nm⁻¹ in the Scheldt estuary. The comparative analysis of a_CDOM(375) and S variations evidenced different origins of CDOM in the BCZ. The Scheldt estuarine waters showed decreasing a_CDOM(375) values with increasing salinity but constant S value of ∼0.018 nm⁻¹ suggesting a dominant terrestrial origin of CDOM. On the contrary, samples collected in the marine domain showed a narrow range of a_CDOM(375) but highly variable S suggesting the additional presence of autochthonous sources of CDOM. This source was evidenced based on the sorting of the marine offshore data according to the stage of the phytoplankton bloom when they were collected. A clear distinction was made between CDOM released during the growth stage characterized by high S (∼0.017 nm⁻¹) and low a_CDOM(375) and the decay phase characterized by low S (∼0.013 nm⁻¹) and high a_CDOM(375). This observation was supported by CDOM measurements performed on pure phytoplankton cultures which showed increased CDOM release along the wax and wane of the bloom but decreasing S. We concluded that the high variability of the CDOM signature in offshore waters is explained by the local biological production and processing of CDOM.     

The response of phytoplankton to iron enrichment in Sub-Antarctic HNLCLSi waters: Results from the SAGE experiment

Areas of high nutrients and low chlorophyll a comprise nearly a third of the world’s oceans, including the equatorial Pacific, the Southern Ocean and the Sub-Arctic Pacific. The SOLAS Sea-Air Gas Exchange (SAGE) experiment was conducted in late summer, 2004, off the east coast of the South Island of New Zealand. The objective was to assess the response of phytoplankton in waters with low iron and silicic acid concentrations to iron enrichment. We monitored the quantum yield of photochemistry (F_v/F_m) with pulse amplitude modulated fluorometry, chlorophyll a, primary productivity, and taxonomic composition. Measurements of F_v/F_m indicated that the phytoplankton within the amended patch were relieved from iron stress (F_v/F_m approached 0.65). Although there was no significant difference between IN and OUT stations at points during the experiment, the eventual enhancement in chlorophyll a and primary productivity was twofold by the end of the 15-day patch occupation. However, no change in particulate carbon or nitrogen pools was detected. Enhancement in primary productivity and chlorophyll a were approximately equal for all phytoplankton size classes, resulting in a stable phytoplankton size distribution. Initial seed stocks of diatoms were extremely low, <1% of the assemblage based on HPLC pigment analysis, and did not respond to iron enrichment. The most dominant groups before and after iron enrichment were type 8 haptophytes and prasinophytes that were associated with ∼75% of chlorophyll a. Twofold enhancement of biomass estimated by flow cytometry was detected only in eukaryotic picoplankton, likely prasinophytes, type 8 haptophytes and/or pelagophytes. These results suggest that factors other than iron, such as silicic acid, light or physical disturbance limited the phytoplankton assemblage during the SAGE experiment. Furthermore, these results suggest that additional iron supply to the Sub-Antarctic under similar seasonal conditions and seed stock will most likely favor phytoplankton <2 ??m. This implies that any iron-mediated gain of fixed carbon will most likely be remineralized in shallow water rather than sink and be sequestered in the deep ocean.     

The strengthening East Australian Current, its eddies and biological effects — an introduction and overview

The poleward flowing East Australian Current (EAC) is characterised by its separation from the coast, 100-200 nautical miles north of Sydney, to form the eastward flowing Tasman Front and a southward flowing eddy field. The separation zone greatly influences coastal ecosystems for the relatively narrow continental shelf (only 15-50 km wide), particularly between 32-34°S. In this region the continental shelf has a marked shift in the seasonal temperature-salinity relationship and elevated surface nitrate concentrations. This current parallels the portion of the coast where Australia’s population is concentrated and has a long history of scientific research. However, understanding of physical and biological processes driven by the EAC, particularly in linking circulation to ecosystems, is limited. In this special issue of 16 papers on the EAC, we examine the effects of climatic wind-stress forced ocean dynamics on EAC transport variability and coastal sea level, from ENSO to multi-decadal time scales; eddy formation and structure; fine scale connectivity and larval retention. Comparisons with the poleward-flowing Leeuwin Current on Australia’s west coast show differences in ecosystem productivity that can be attributed to the underlying physics in each region. On average there is double the chlorophyll a concentration on the east coast than the west. In comparison to the Leeuwin, the EAC may have less local retention of larvae and act as a partial barrier to onshore transport, which may also be related to the local spawning and early life history of small pelagic fish on each coast. Inter-annual variations in the EAC transport produce a detectable sea-level signal in Sydney Harbour, which could provide a useful fisheries index as does the Fremantle sea level and Leeuwin Current relationship. The EAC’s eddy structure and formation by the EAC are examined. A particular cold-core eddy is shown to have a “tilt” towards the coast, and that during a rotation the flow of particles may rise up to the euphotic zone and then down beneath. In a warm-core eddy, surface flooding is shown to produce a new shallower surface mixed layer and promote algal growth. An assessment of plankton data from 1938-1942 showed that the local, synoptic conditions had to be incorporated before any comparison with the present. There are useful relationships of water mass characteristics in the Tasman Sea and separation zone with larval fish diversity and abundance, as well as with long-line fisheries. These fisheries-pelagic habitat relationships are invaluable for fisheries management, as well as for climate change assessments.There is further need to examine the EAC influence on rainfall, storm activity, dust deposition, and on the movements by fish, sharks and whales. The Australian Integrated Marine Observing System (IMOS) has provided new infrastructure to determine the changing behaviour of the EAC and its bio-physical interaction with the coasts and estuaries. The forecasting and hindcasting capability developed under the Bluelink project has provided a new tool for data synthesis and dynamical analysis. The impact of a strengthening EAC and how it influences the livelihoods of over half the Australian population, from Brisbane to Sydney, Hobart and Melbourne, is just being realised.     

Seasonal and interannual variability in phytoplankton and nutrient dynamics along Line P in the NE subarctic Pacific

We analysed mixed-layer seasonal and interannual variability in phytoplankton biomass and macronutrient (NO₃ and Si(OH)₄) concentrations from three decades of observations, and nitrogen uptake rates from the 1990s along Line P in the NE subarctic Pacific. Chlorophyll a concentrations near 0.35 mg m⁻³ were observed year-round along Line P except at the nearshore station (P4) where chlorophyll a concentrations in spring were on average 2.4 times the winter values. In contrast, the temporal variability in carbon-to-chlorophyll ratios at the two main end members of Line P (P4 and OSP) was high. Large seasonal and interannual variability in NO₃ and Si(OH)₄ concentration were observed along Line P. Highest upper mixed-layer (top 15 m) nutrient concentrations occurred on the continental shelf in late summer and early fall due to seasonal coastal upwelling. Beyond the shelf, maximum nutrient concentrations increased gradually offshore, and were highest in late winter and early spring due to mixing by winter storms. Interannual variations in upper mixed-layer nutrient concentrations beyond the shelf (>128°W) were correlated with E-W winds and the PDO since 1988 but were not correlated with either climate index between 1973 and 1981. Despite differences in nutrient concentration, nutrient utilization (ΔNO₃ and ΔSi(OH)₄) during the growing season were about 7.5 μM at all offshore stations. Variations in ΔNO₃ were correlated with those of ΔSi(OH)₄. The annual cycle of absolute NO₃ uptake (ρNO₃) and NH₄ uptake (ρNH₄) rates by phytoplankton in the upper mixed-layer showed a weak increasing trend from winter to spring/summer for the period 1992-1997. Rates were more variable at the nearshore station (P4). Rates of ρNO₃ were low along the entire line despite abundant NO₃ and low iron (Fe), at the offshore portion of Line P and sufficient Fe at the nearshore station (P4). As a result, new production contributed on average to only 32 ± 15% of the total nitrogen (N) uptake along Line P. NO₃ utilization in the NE subarctic Pacific is probably controlled by a combination of environmental variables, including Fe, light and ambient NH₄ levels. Elevated ambient NH₄ concentrations seem to decrease the rates of new production (and f-ratios) in surface waters of the oceanic subarctic NE Pacific. Contrary to expectation, phytoplankton biomass, nutrient utilization (ΔNO₃ and ΔSi(OH)₄), and nitrogen uptake (ρNO₃ + ρNH₄) varied relatively little along Line P, despite significant differences in the factors controlling phytoplankton composition assemblages and production. Future studies would benefit from including other variables, especially light limitation, to improve our understanding of the seasonal and interannual variability in phytoplankton biomass and nutrients in this region.     

Phytoplankton community adaptation to changing light levels in the southern Beaufort Sea,Canadian Arctic

The chlorophyll a specific absorption coefficient of phytoplankton, a_φ^∗(λ) is an important parameter to determine for primary production models and for the estimation of phytoplankton physiological condition. Knowledge of this parameter at high latitudes where nutrient rich cold water submitted to low incident light is a common environment is almost nonexistent. To address this issue, we investigated the light absorption properties of phytoplankton as a function of irradiance, temperature, and nutrients using a large data set in the southern Beaufort Sea during the open water to ice cover transition period. The a_φ^∗(λ) tended to increase from autumn when open water still existed to early winter when sea ice cover was formed, resulting from a biological selection of smaller-size phytoplankton more efficient to absorb light. There was no significant correlation between a_φ^∗(λ) and irradiance or temperature for both seasons. However, a_φ^∗(λ) showed a significant positive correlation with NO₃ + NO₂. Implications of the results for phytoplankton community adaptation to changing light levels are discussed.     

Spectral absorption coefficient of photosynthetically active pigments in the equatorial Pacific Ocean (165°11–150°W)

Spectral absorption coefficients of total particulate material and detritus were measured throughout the euphotic zone along the equator between 165°E and 150°W and during time-series for each of these two longitudes in October 1994 (JGOFS-FLUPAC cruise). The sum of pigments obtained by spectrofluorometry (tChla=DV−chla+Chla) was used for normalization (and was also compared to fluorometric and HPLC measurements as an intercalibration study). In order to assess the specific absorption coefficient of photosynthetically active pigments (aps) from the pigment-specific absorption coefficient for phytoplankton (a_ph^*), we made a multiple regression analysis of measured phytoplankton absorption spectra onto publishedin vivo spectra of pure pigments. This made it possible to calculate the concentrations of photoprotective carotenoids (tPPC) when HPLC measurements were not available and thus to subtract their contribution to absorption from the total phytoplanktonic absorption coefficient (a_ph). Methodological uncertainties in both coefficients used for calculating absorption coefficients and in pigment measurements are discussed. Pigments and absorption measurements made during the cruise enabled us to describe two typical trophic regimes in the equatorial Pacific ocean: oligotrophic waters of the ”warm pool“ west of 170°W and high-nutrient, low-chlorophyll waters (HNLC) of the upwelling east of 170°W. The vertical decreasing gradient of a_ph^* from the surface to the deep chlorophyll maximum (DCM) was due to a high tPPC/tChla ratio at the surface and was higher in the oligotrophic (0.14-0.065 m² mg (tChla)⁻¹ biomass dominated byProchlorococcus, rich in zeaxanthin) than in the mesotrophic area (0.07-0.06 m2 mg (tChl a)-' biomass dominated by picoeucaryotes). Below the DCM,a_ph^* reached a similar minimum value in both oligotrophic and mesotrophic areas.a^*_ps varied less than a^*_ph from the surface layer to the DCM in both oligotrophic and mesotrophic areas. The difference in a^*_ph and a^*_ps from west to east of the transect could be interpreted as a shift in the phytoplankton composition, with a dominance of procaryotes in the west and a dominance of eucaryotes in the upwelling area. Higher aps in well-lit typical oligotrophic waters indicated that phytoplankton communities dominated byProclorococcus might be more efficient for capturing light usable for photosynthesis than those present in the HNLC situation.     

Spatial and temporal variability of microplankton and detritus, and their export to the shelf sediments in the upwelling area off Concepción, Chile (∼36°S), during 2002-2005

Seasonal variations in diversity and biomass of diatoms, tintinnids, and dinoflagellates and the contribution of microplankton and faecal material to the vertical flux of particulates were investigated at one time series station T (station 18) between 2002 and 2005 and at a grid of stations during November 2004 in the coastal and oceanic area off Concepción (36°S), Chile. The variations were analysed in relation to water column temperature, dissolved oxygen, nutrient concentration, offshore Ekman transport, and chlorophyll-a concentration. Abundance was estimated as cell numbers per litre and biomass in terms of biovolume and carbon units.A sharp decrease with depth was observed in the abundance of both phytoplankton and microzooplankton during the whole annual cycle; over 70% of their abundance was concentrated in the upper 10 m of the water column. Also, a clear seasonality in microplankton distribution was observed at station T, with maxima for diatoms, tintinnids, and dinoflagellates every summer (centred on January) from 2002 to 2005.On the grid of stations, the maximum integrated (0-50 m) micro-phytoplankton abundances (>1 × 10⁹ cells m⁻²) occurred at the coastal stations, an area directly influenced by upwelling. A similar spatial distribution was observed for the integrated (0-200 m) faecal carbon (with values up to 632 mg C m⁻²). Tintinnids were distributed in all the first 300 miles from the coast and dinoflagellates were more abundant in oceanic waters.At station T, the average POC export production (below 50 m depth) was 16.6% (SD = 17%; range 2-67%; n = 16). The biological-mediated fluxes of carbon between the upper productive layer and the sediments of the continental shelf off Concepción depend upon key groups of phytoplankton (Thalassiosira spp., Chaetoceros spp.) and zooplankton (euphausiids) through the export of either cells or faecal material, respectively.     

Nutrients in an oligotrophic boundary current: Evidence of a new role for the Leeuwin Current

New observations along the continental shelf of Western Australia provide a novel explanation for the established ∼60 years relationship between Leeuwin Current (LC) strength and greater winter nitrate concentrations at 32°S plus the inter-annual variation in the magnitude of the annual, shelf-scale, phytoplankton bloom. The potential source of dissolved nitrogen to support the annual shelf scale phytoplankton bloom was identified as thin layers of an unprecedented areal extent, nitrate concentration and shallow nature that were observed off the northwest of Australia. We propose that the dissolved inorganic nitrogen (DIN) in these layers enters the LC at depth and then enters the euphotic zone via by three mechanisms: instability that results in a warm core eddy, cooling that deepens the surface mixed layer and shallowing of the thin layer. During the onset of the annual phytoplankton bloom along the west coast of Australia from 22°S to 34°S the poleward flowing LC was clearly evident as a surface intensified ocean boundary current transporting warmer, lower-salinity, greater-silicate waters in a shallow mixed layer rapidly southward. Between 24 and 26°S the core of the LC was present as a 50–100 m deep layer over one or more thin layers, 15–50 m thick, with high nitrate and low dissolved oxygen (DO). These layers were of lower salinity, cooler water with markedly reduced DO, high nitrate concentrations and distinct nitrate:silicate (NO₃:Si(OH)₄) nutrient ratios. As the LC flowed south it cooled and deepened thereby entraining the thin layers of high nitrate water into the euphotic zone. The LC also formed large (greater than 100 km diameter) warm core eddies with a deep surface mixed layer that also entrained nitrate from these thin layers. In some locations as far south as 32°S the LC was still present with the thin layer of high nitrate intact but now within the euphotic zone. Thus, the available evidence suggests the LC arises under conditions that favour rapid and shallow nitrification. This nitrification fuels a shelf-scale bloom on a downwelling favourable coast. Depending upon the rate of nitrification the source of the particular organic matter may be local or delivered from the tropics via horizontal advection in a subsurface layer of the LC.     

Particle fluxes in San Pedro Basin, California: A four-year record of sedimentation and physical forcing

Moored sediment traps were deployed from January 2004 through December 2007 at depths of 550 and 800 m in San Pedro Basin (SPB), CA (33°33.0′N, 118°26.5′W). Additionally, floating sediment traps were deployed at 100 and 200 m for periods of 12-24 h during spring 2005, fall 2007, and spring 2008. Average annual fluxes of mass, particulate organic carbon (POC), ??¹³C_org, particulate organic nitrogen (PON), ??¹⁵N-PON, biogenic silica (bSiO₂), calcium carbonate (CaCO₃), and detrital material (non-biogenic) were coupled with climate records and used to examine sedimentation patterns, vertical flux variability, and organic matter sources to this coastal region. Annual average flux values were determined by binning data by month and averaging the monthly averages. The average annual fluxes to 550 m were 516±42 mg/m² d for mass (sdom of the monthly averages, n=117), 3.18±0.26 mmol C/m² d for POC (n=111), 0.70±0.05 mmol/m² d for CaCO₃ (n=110), 1.31±0.21 mmol/m² d for bSiO₂ (n=115), and 0.35±0.03 mmol/m² d for PON (n=111). Fluxes to 800 and to 550 m were similar, within 10%. Annual average values of ??¹³C_org at 550 m were −21.8±0.2‰ (n=108), and ??¹⁵N averages were 8.9±0.2‰ (n=95). The timing of both high and low flux particle collection was synchronous between the two traps. Given the frequency of trap cup rotation (4-11 days), this argues for particle settling rates ≥83 m/d for both high and low flux periods. The moored traps were deployed over one of the wettest (2004-2005, 74.6 cm rainfall) and driest (2006-2007, 6.6 cm) rain years on record. There was poor correlation (Pearson's correlation coefficient, 95% confidence interval) of detrital mass flux with: C_org/N ratio (r=0.10, p=0.16); ??¹⁵N (r=−0.19, p=0.02); and rainfall (r=0.5, p=0.43), suggesting that runoff does not immediately cause increases in particle fluxes 15 km offshore. ??¹³C_org values suggest that most POC falling to the basin floor is marine derived. Coherence between satellite-derived chlorophyll a records from the trap location (±9 km² resolution) and SST data indicates that productivity and export occurs within a few days of upwelling and both of these parameters are reasonable predictors of POC export, with a time lag of a few days to 2 weeks (with no time lag—SeaWiFS chlorophyll a and POC flux, r=0.25, p=0.0014; chlorophyll a and bSiO₂ flux, r=0.28, p=0.0002).     

An overview of Calanus helgolandicus ecology in European waters

We review current knowledge and understanding of the biology and ecology of the calanoid copepod Calanus helgolandicus in European waters, as well as provide a collaborative synthesis of data from 18 laboratories and 26 sampling stations in areas distributed from the northern North Sea to the Aegean and Levantine Seas. This network of zooplankton time-series stations has enabled us to collect and synthesise seasonal and multi-annual data on abundance, body size, fecundity, hatching success and vertical distribution of C. helgolandicus. An aim was to enable comparison with its congener Calanus finmarchicus, which has been studied intensively as a key component of European and north east Atlantic marine ecosystems. C. finmarchicus is known to over-winter at depth, whereas the life-cycle of C. helgolandicus is less well understood. Overwintering populations of C. helgolandicus have been observed off the Atlantic coast between 400 and 800 m, while in the Mediterranean there is evidence of significant deep-water populations at depths as great as 4200 m. The biogeographical distribution of C. helgolandicus in European coastal waters covers a wide range of habitats, from open ocean to coastal environments, and its contribution to mesozooplankton biomass ranges from 6% to 93%. Highest abundances were recorded in the Adriatic and off the west coast of Spain. C. helgolandicus is generally found in 9-20 °C water, with maximum abundances from 13-17 °C. In contrast, C. finmarchicus is found in cooler water between 0 and 15 °C, with peak abundances from 0 to 9 °C. As water has warmed in the North Atlantic over recent decades, the range of C. helgolandicus and its abundance on the fringes of its expanding range have increased. This review will facilitate development of population models of C. helgolandicus. This will not only help answer remaining questions but will improve our ability to forecast future changes, in response to a warming climate, in the abundance and distribution of this important species.     

Close coupling between ammonium uptake by phytoplankton and excretion by Antarctic krill, Euphausia superba

In this study we examined the hypothesis that, under conditions of replete macronutrients and iron in the Southern Ocean, phytoplankton abundance and specific N uptake rates are influenced strongly by the processes of grazing and NH₄ regeneration. NH₄ and NO₃ uptake rates by marine phytoplankton were measured to the northeast and northwest of the island of South Georgia during January-February 1998. Mean specific uptake rate for NO₃ (vNO₃) was 0.0026 h⁻¹ (range 0.0013-0.0065 h⁻¹) and for NH₄ (vNH₄) was 0.0097 h⁻¹ (0.0014-0.0376 h⁻¹). vNH₄ was related positively with NH₄ availability, which ranged from 0.1 to 1.5 mmol m⁻³ within the upper mixed layer. Ambient NH₄ concentrations and vNH₄ were both positively related to local krill biomass values, computed from mean values along acoustic transect segments within 2 km of the uptake measurement stations. These biomass values ranged from ∼1 g krill fresh mass m⁻² in the northwest to >4 kg krill wet mass m⁻² in the northeast. In contrast to the variability found with NH₄ concentrations and uptake rates, vNO₃ was more uniform across the sampling sites. Under these conditions, increasing NH₄ concentration appeared to represent an additional N resource. However, high vNH₄ tended to be found for stations with lower phytoplankton standing stocks, across a total range of 0.24-20 mg chlorophyll a m⁻³. These patterns suggest a coupling between phytoplankton biomass, vNH₄ and krill in this region of variable but high krill biomass. Locally high concentrations of krill in parts of the study area appeared to have two opposing effects. On the one hand they could graze down phytoplankton stocks, but on the other hand, their NH₄ excretion supported enhanced uptake rates by the remaining, ungrazed cells.     

Grazing suppression of dimethylsulphoniopropionate (DMSP) accumulation in iron-fertilised, sub-Antarctic waters

The impact of in situ iron fertilisation on the production of particulate dimethylsulphoniopropionate (DMSPp) and its breakdown product dimethyl sulphide (DMS) was monitored during the SOLAS air-sea gas exchange experiment (SAGE). The experiment was conducted in the high nitrate, low chlorophyll (HNLC) waters of the sub-Antarctic Southern Ocean (46.7°S 172.5°E) to the south-east of New Zealand, during March-April, 2004. In addition to monitoring net changes in the standing stocks of DMSPp and DMS, a series of dilution experiments were used to determine the DMSPp production and consumption rates in relation to increased iron availability. In contrast to previous experiments in the Southern Ocean, DMS concentrations decreased over the course of the 15-d iron-fertilisation experiment, from an integrated volume-specific concentration in the mixed layer on day 0 of 0.78 nM (measured values 0.65-0.91 nM) to 0.46 nM (measured values 0.42-0.47 nM) by day 15, in parallel with the surrounding waters. DMSPp, chlorophyll a and the abundance of photosynthetic picoeukaryotes exhibited indiscernible or only moderate increases in response to the raised iron availability, despite an obvious physiological response by the phytoplankton. High specific growth rates of DMSPp, equivalent to 0.8-1.2 doublings d⁻¹, occurred at the simulated 60% light level of the dilution experiments. Despite the high production rates, DMSPp accumulation was suppressed in part by microzooplankton grazers who consumed between 61% d⁻¹ and 126% d⁻¹ of the DMSPp production. Temporal trends in the rates of production and consumption illustrated a close coupling between the DMSP-producing phytoplankton and their microzooplankton grazers. Similar grazing and production rates were observed for the eukaryotic picophytoplankton that dominated the phytoplankton biomass, partial evidence that picoeukaryotes contributed a substantial proportion of the DMSP synthesis. These rates for DMSPp and picoeukaryotes were considerably higher than for chlorophyll a, indicating higher cycling rates of the DMSP-producing taxa than for the bulk phytoplankton community. When compared to the total phytoplankton community, there was no evidence of selection against the DMSP-containing phytoplankton by the microzooplankton grazers; the opposite appeared to be the case. SAGE demonstrated that increased iron availability in the HNLC waters of the Southern Ocean does not invariably lead to enhanced DMS sea-air flux. The potential suppression of DMSPp accumulation by grazers needs to be taken into account in future attempts to elevate DMS emission through in situ iron fertilisation and in understanding the hypothesised link between levels of Aeolian iron deposition in the Southern Ocean, DMS emission and global albedo.     

Phytoplankton growth and microzooplankton grazing in the subarctic Pacific Ocean and the Bering Sea during summer 1999

Phytoplankton growth and microzooplankton grazing rates were measured by the dilution technique in the subarctic North Pacific Ocean along a west–east transect during summer 1999. Average phytoplankton growth rates without added nutrients (μ₀) were 0.33, 0.41, 0.20 and 0.49 d⁻¹ for the four regions sampled: the Western Gyre, the Bering Sea, the Gulf of Alaska gyre and stations along the Aleutian Trench. Average grazing mortality rates (m) were 0.34, 0.27, 0.20 and 0.49 d⁻¹. Limitation of phytoplankton growth by macronutrients, such as NO₃ and SiO₂, was identified only at a few stations, with overall μ₀/μ_n (μ_n is nutrient-enhanced growth rate) averaging 0.9. Phytoplankton growth and microzooplankton grazing were approximately balanced, as indicated by high m/μ₀ ratio, except in the Bering Sea, where the m/μ₀ ratio was 0.65, indicating the relative importance of the diatom-macrozooplankton grazing food chain and possible higher export flux to the deep layer. Flow cytometric analysis revealed that the growth rates of picoplankton (Synechococcus and picoeukaryotes) were usually much lower than the total phytoplankton community growth rates estimated from chlorophyll a, except for stations in the Gulf of Alaska Gyre, where the growth rates for different populations were about the same. Lower than community-average growth rate for picoplankton indicates larger phytoplankters, presumably diatoms, were growing at a much faster rate. Suppressed phytoplankton growth in the Gulf of Alaska was probably a result of iron limitation.     

Expected and observed conditions during the SAGE iron addition experiment in Subantarctic waters

The SAGE iron addition experiment was conducted from R.V. Tangaroa east of South Island, New Zealand, in late March-early April 2004. A desktop survey of climatological data was completed before the experiment, providing information to inform site selection and experiment design. The desktop survey is presented here in updated and enhanced form in order to explain the site selection and describe the conditions expected at the site during the experiment in comparison with those actually encountered.The experiment site was in Subantarctic waters between the Subtropical and Subantarctic Fronts. These waters are characterised by high surface macronutrient concentration, low iron concentration and low chlorophyll. The preferred site based on the desktop survey was in the vicinity of 173.5°E, 47.5°S, in Southern Bounty Trough. The actual release location was chosen immediately before the release and was 112 km to the northwest of this at 172°32′E, 46°44′S. The surface water here has typically come from the southwest (over the northern Campbell Plateau) or the southeast (through Pukaki Gap) and the mean current is directed towards ENE at ∼0.1 m s⁻¹. The release location is well removed from regions of high eddy kinetic energy to the east (where the Subantarctic Front reaches its northern limit) and the west (where fine-scale instabilities develop on the Southland Front, which flows along the continental shelf). Typical conditions at the release site at the end of March are: surface temperature 12 °C; mixed layer depth 40 m; surface chlorophyll concentration ∼0.3 mg m⁻³; surface photosynthetically active radiation (PAR) 23 E m⁻² d⁻¹; surface nutrient concentrations 8-10 mmol m⁻³ (nitrate), 0.5-0.8 mmol m⁻³ (phosphate), 1-2 mmol m⁻³ (silicate) and 0.1-0.5 nM (iron); 99th percentile wind speed 19-21 m s⁻¹. At this time of year, surface PAR is well below its summer maximum, the mixed layer is beginning its seasonal deepening and the silicate concentration is at its seasonal minimum. These factors may have limited the phytoplankton response to iron addition and were compounded in March-April 2004 by strong winds early in the experiment (substantially exceeding the 99th percentile in speed), lower than the average SST, larger than the average mixed layer depth, silicate concentration at the bottom end of the expected range and initially low PAR.     

The distribution of chlorophyll-a and dominant planktonic components in the coastal transition zone off Concepción, central Chile, during different oceanographic conditions

The oceanographic setting and the planktonic distribution in the coastal transition zone off Concepción (∼35-38°S, ∼73-77°W), an area characterized by its high biological production, were assessed during two different seasons: austral spring with equatorward upwelling favorable winds and austral winter with predominately northerly winds. Oceanographic and biological data (total chlorophyll-a, particulate organic carbon, microplankton, large mesozooplankton >500 μm as potential consumers of microplankton) were obtained during two cruises (October 1998, July 1999) together with satellite imagery for wind stress, geostrophic flow, surface temperature, and chlorophyll-a data. The physical environment during the spring sampling was typical of the upwelling period in this region, with a well-defined density front in the shelf-break area and high concentrations of surface chlorophyll-a (>5 mg m⁻³) on the shelf over the Itata terrace. During the winter sampling, highly variable though weakly upwelling-favorable winds were observed along with lower surface chlorophyll-a values (<2 mg m⁻³) on the shelf. In the oceanic area (>100 km from the coast), cyclonic and anti-cyclonic eddies were evident in the flow field during both periods, the former coinciding with higher chlorophyll-a contents (∼1 mg m⁻³) than in the surrounding waters. Also, a cold, chlorophyll-a rich filament was well defined during the spring sampling, extending from the shelf out to 350-400 km offshore. Along a cross-shelf transect, the micro- and meso-planktonic assemblages displayed higher coastal abundances during the spring cruise but secondary peaks appeared in the oceanic area during the winter cruise, coinciding with the distribution of the eddies. These results suggest that the mesoscale features in this region, in combination with upwelling, play a role in potentially increasing the biological productivity of the coastal transition zone off Concepción.