Importance of seagrass as a carbon source for heterotrophic bacteria in a subtropical estuary (Florida Bay)

A stable carbon isotope approach was taken to identify potential organic matter sources incorporated into biomass by the heterotrophic bacterial community of Florida Bay, a subtropical estuary with a recent history of seagrass loss and phytoplankton blooms. To gain a more complete understanding of bacterial carbon cycling in seagrass estuaries, this study focused on the importance of seagrass-derived organic matter to pelagic, seagrass epiphytic, and sediment surface bacteria. Particulate organic matter (POM), seagrass epiphytic, seagrass (Thalassia testudinum) leaf, and sediment surface samples were collected from four Florida Bay locations with historically different organic matter inputs, macrophyte densities, and primary productivities. Bulk (observed and those reported previously) and compound-specific bacterial fatty acid δ¹³C values were used to determine important carbon sources to the estuary and benthic and pelagic heterotrophic bacteria. The δ¹³C values of T. testudinum green leaves with epiphytes removed ranged from −9.9 to −6.9‰. Thalassia testudinum δ¹³C values were significant more enriched in ¹³C than POM, epiphytic, and sediment samples, which ranged from −16.4 to −13.5, −16.2 to −9.6, and −16.7 to −11.0‰, respectively. Bacterial fatty acid δ¹³C values (measured for br14:0, 15:0, i15:0, a15:0, br17:0, and 17:0) ranged from −25.5 to −8.2‰. Assuming a −3‰ carbon source fractionation from fatty acid to whole bacteria, pelagic, epiphytic, and sediment bacterial δ¹³C values were generally more depleted in ¹³C than T. testudinum δ¹³C values, more enriched in ¹³C than reported δ¹³C values for mangroves, and similar to reported δ¹³C values for algae. IsoSource mixing model results indicated that organic matter derived from T. testudinum was incorporated by both benthic and pelagic bacterial communities, where 13–67% of bacterial δ¹³C values could arise from consumption of seagrass-derived organic matter. The IsoSource model, however, failed to discriminate clearly the fraction of algal (0–86%) and mangrove (0–42%) organic matter incorporated by bacterial communities. These results indicate that pelagic, epiphytic, and sediment surface bacteria consumed organic matter from a variety of sources. Bacterial communities incorporated consistently seagrass-derived organic matter, the dominant macrophyte in Florida Bay, but seagrass δ¹³C values alone could not account fully for bacterial δ¹³C values.     

Combined stomach content and δ13C/δ15N analyses of oilfish,escolar, snake mackerel and lancetfish in the western North Atlantic

Large, mesopelagic teleost fishes have a potentially keystone position in the ecology of the pelagic water column, yet remain relatively unstudied when compared with large, commercially important, epipelagic fishes. Here, the ecological roles of four, large, vertically migrating teleosts were examined. Stomach content analyses were performed on 48 oilfish (Ruvettus pretiosis), 35 escolar (Lepidocybium flavobrunneum), 32 snake mackerel (Gempylus serpens) and seven lancetfish (Alepisaurus spp.) collected from pelagic longline gear in the Western North Atlantic Ocean from 2007 to 2010. Of these specimens, stable carbon and nitrogen isotope analyses were also performed on white dorsal muscle tissue from 33 oilfish, 16 escolar, 27 snake mackerel and seven lancetfish. Based on literature length‐at‐maturity values, all escolar, snake mackerel and lancetfish specimens were mature, while 13 of the 33 oilfish were juveniles. Crustaceans, annelids, salps, cephalopods and teleosts were present in the stomachs and were presumed to be prey items. A Kruskal–Wallis test showed the four species to be isotopically segregated in both δ¹³C and δ¹⁵N. Escolar were the most depleted in δ¹³C, followed by adult oilfish, juvenile oilfish and lancetfish, with snake mackerel the most enriched. The depletion in δ¹³C of adult oilfish and escolar may have been attributable to high C/N values, which were strongly correlated with length in oilfish, weakly correlated with length in escolar and moderately correlated with length in snake mackerel and lancetfish. The high C/N was likely due to the high lipid concentration of these fishes. Other factors that may have contributed to the depletion in δ¹³C may include spawning or a change in carbon source within the ecosystem. Large escolar occupied the highest trophic level (δ¹⁵N = 10.20), followed by snake mackerel (δ¹⁵N = 9.66), adult oilfish (δ¹⁵N = 9.32), lancetfish (δ¹⁵N = 9.05) and juvenile oilfish (δ¹⁵N = 7.83). A marked change in oilfish δ¹³C and C/N at 30–35 cm fork length coincided with a presumed length‐at‐maturity.     

Habitat heterogeneity influences cold‐seep macrofaunal communities within and among seeps along the Norwegian margin – Part 2: contribution of chemosynthesis and nutritional patterns

The relative contribution of chemosynthesis in heterotrophic fauna at seeps is known to be influenced by depth and by habitat. Using stable isotopes of carbon and nitrogen, we investigated macro‐ and megafaunal nutritional patterns in Norwegian margin cold seeps by comparing food webs both among habitats within a seep site and between different sites. The very active Håkon Mosby mud volcano (HMMV) is characterized by geochemical gradients, microbial activity and faunal zonation from the centre to the periphery. The Storegga Slide (600–900 m depth) has pockmarks with patchy less active seeps, and also shows concentric zonation of habitats but at much smaller spatial scale. The dominant carbon source for macrofaunal nutrition in both areas was chemosynthetically fixed and the bulk of organic carbon was derived from sulphur‐oxidizing bacteria. In HMMV, food chains were clearly separated according to habitats, with significantly lighter δ¹³C signatures on microbial mats and adjacent sediment (?33.06 to ?50.62‰) than in siboglinid fields (?19.83 to ?35.03‰). Mixing model outputs revealed that the contribution of methane‐derived carbon was small in siboglinid fields (0–17%) but significant (39–61%) in the microbial mats. Moreover, the variability of macrofauna signatures within this later habitat suggests the co‐occurrence of two food chains, one based on primary production via methanotrophy and the other via sulphide oxidation. The length of the food chains also varied among habitats, with at least one more trophic level in the siboglinid fields located at the periphery of the volcano. Conversely, in Storrega pockmarks, faunal δ¹³C signatures did not vary among habitats but among species, although separate food chains seem to co‐occur. The small size of the seepage areas and their lower fluxes compared to HMMV allow more background species to penetrate the seep area, increasing the range of δ¹⁵N and the trophic level number. Probably due to the higher flux of photosynthetic particulate organic carbon, the overall chemosynthesis‐based carbon contribution in invertebrate nutrition was lower than that in HMMV.     

Food webs in forest and pasture streams in the Waikato region,New Zealand: A study based on analyses of stable isotopes of carbon and nitrogen,and fish gut contents

Abstract

Stable isotopes of carbon (C) and nitrogen (N) were studied in 11 stream communities in the Waikato region of New Zealand. From comparisons of mean δ¹³C and δ¹⁵N values, food webs in the shaded, forest streams were clearly based on allochthonous material (conditioned leaf litter and terrestrial invertebrates). Autotrophs in forest streams were not a significant C source for the food webs. However, the C source of food webs in the unshaded pasture streams appeared to be a mixture of allochthonous and autochthonous material. Conditioned leaf litter appeared to contribute to the pasture stream food webs, and the δ¹³C and δ¹⁵N of some samples of epilithic diatoms indicated their consumption by invertebrates in pasture streams. Fish ate a wide range of aquatic invertebrates; longfinned eels (Anguilla dieffenbachii) and banded kokopu (Galaxias fasciatus) also had a large proportion of terrestrial invertebrates in their diet. Filamentous green algae were found only at pasture sites, where they were sometimes abundant. The wide range of δ¹³C values of filamentous green algae (‐18.8 to ‐29.7‰) complicated understanding of their role in the stream food webs. The δ¹³C values of Cladophora were related to water velocity, with more ¹³C‐enriched values in pools than in runs (‐23.2‰ in pools, mean velocity 0.12 m s^?1; ‐28.1‰ in runs, mean velocity 0.24 m s^?1). Crayfish and the gastropod mollusc Potamopyrgus appeared to be the only invertebrates to eat filamentous green algae.     

Resource partitioning among air‐breathing marine predators: are body size and mouth diameter the major determinants?

Although the body size of consumers may be a determinant factor in structuring food webs, recent evidence indicates that body size may fail to fully explain differences in the resource use patterns of predators in some situations. Here we compared the trophic niche of three sympatric and sexually dimorphic air‐breathing marine predators (the South American sea lion, Otaria flavescens, the South American fur seal, Arctocephalus australis, and the Magellanic penguin, Spheniscus magellanicus) in three areas of the Southwestern Atlantic Ocean (Río de la Plata and adjoining areas, Northern Patagonia and Southern Patagonia), in order to assess the importance of body size and mouth diameter in determining resource partitioning. Body weight and palate/bill breadth were used to characterize the morphology of each sex and species, whereas the trophic niche was assessed through the use of stable isotope ratios of carbon and nitrogen. The quantitative method Stable Isotope Bayesian Ellipses in R (SIBER) was used to compute the area of the Bayesian ellipses and the overlap of the isotopic niches. The results showed that morphological similarity was significantly correlated with isotopic distance between groups within the δ¹³C–δ¹⁵N bi‐plot space in the Río de la Plata area, but not in Northern and Southern Patagonia. Furthermore, resource partitioning between groups changed regionally, and some morphologically distinct groups exhibited a large trophic overlap in certain areas, such as the case of male penguins and male sea lions in Southern Patagonia. Conversely, female sea lions always overlapped with the much larger males of the same species, but never overlapped with the morphologically similar male fur seals. These results indicate that body size and mouth diameter are just two of the factors involved in resource partitioning within the guild of air‐breathing predators considered here, and for whom – under certain environmental conditions – other factors are more important than morphology.     

Assessing waterbird habitat use in coastal evaporative systems using stable isotopes (δC, δN and δD) as environmental tracers

Isotopic patterns of biota across salinity gradients in man-made evaporative systems could assist in determining the use of these habitats by animals. Here we report δ¹³C, δ¹⁵N and δD measurements of a euryhaline fish, the Mediterranean toothcarp (Aphanius fasciatus), inhabiting a range of salinities in the Thyna saltworks near Sfax (Tunisia). The contribution of these salinity niches to egg formation of two typically piscivorous bird species breeding in the area and feeding within saltworks, Little Tern (Sternula albifrons) and Little Egret (Egretta garzetta), was inferred trough a triple-isotope (δ¹³C, δ¹⁵N and δD) Bayesian mixing model. Isotopic trends for fish δ¹⁵N and δD across the salinity gradient followed the equations: δ¹⁵N = e^{(1.1 + 47.68/Salinity)} and δD = −175.74 + Salinity + Salinity²; whereas fish δ¹³C increased as salinity rose (δ¹³C = −10.83 + 0.02·Salinity), after a sudden drop in fish isotopic values for salinities >60 (Practical Salinity Scale) (average fish δ¹³C for salinities <60 = −5.92‰). Both bird species fed largely on low hypersalinity ponds (salinity = 43; average contribution = 37% and 22% for Little Egrets and Little Terns, respectively), although the use of intermediate hypersalinities (salinities 63 and 70) by Little Terns also occurred (16% and 21%, respectively). Isotopic patterns across salinity gradients allow the use of isotopic measurements to inform studies of habitat occupancy within evaporative systems and provide further insights into how wildlife communities interact with them.     

Trophic ecology of Pomatoschistus microps within an intertidal bay (Roscoff,France), investigated through gut content and stable isotope analyses

The diet of Pomatoschistus microps has been studied using both gut content and stable isotope analyses. In the Roscoff Aber Bay (Brittany, France), this fish is commonly found on sandy muddy intertidal flats. Gut content analyses were also interpreted using trophic indices. Owing to the large diversity of prey consumed, these indices emphasised the opportunistic feeding behaviour of P. microps. Here, this species fed mainly on endofauna with meiofauna being of high relative importance. The main biotic components of its trophic habitat, characterized by δ¹³C and δ¹⁵N, provided evidence of a major trophic pathway based on drift Enteromorpha sp. Trophic positions estimated by both diet analyses and isotopic analyses led to similar results. In this bay, P. microps is a first‐order predator with a low degree of omnivory. Despite a preferential consumption of the amphipod Corophium arenarium, we assumed that this goby behaves as a generalist feeding on a uniform variety of endofauna taxa.     

Lipid biomarkers for anaerobic oxidation of methane and sulphate reduction in cold seep sediments of Nyegga pockmarks (Norwegian margin): discrepancies in contents and carbon isotope signatures

Distributions and carbon isotopic compositions of microbial lipid biomarkers were investigated in sediment cores from the G11 and G12 pockmarks in the Nyegga sector of the Storegga Slide on the mid-Norwegian margin to explore differences in depth zonation, type and carbon assimilation mode of anaerobic methane-oxidizing archaea (ANMEs) and associated sulphate-reducing bacteria responsible for anaerobic oxidation of methane (AOM) in these cold seep environments. While the G11 site is characterised by black reduced sediments colonized by gastropods and Siboglinidae tubeworms, the G12 site has black reduced sediments devoid of fauna but surrounded by a peripheral occurrence of gastropods and white filamentous microbial mats. At both sites, bulk sediments contained abundant archaeal and bacterial lipid biomarkers substantially depleted in ¹³C, consisting mainly of isoprenoidal hydrocarbons and dialkyl glycerol diethers, fatty acids and non-isoprenoidal monoalkylglycerol ethers. At the G11 site, down-core profiles revealed that lipid biomarkers were in maximum abundance from 10 cm depth to the core bottom at 16 cm depth, associated with δ¹³C values of ?57 to ?136‰. At the G12 site, by contrast, lipid biomarkers were in high abundance in the upper 5 cm sediment layer, associated with δ¹³C values of ?43 to ?133‰. This suggests that, as expected from the benthic fauna characteristics of the sites, AOM takes place mainly at depth in the G11 pockmark but just below the seafloor in the G12 pockmark. These patterns can be explained largely by variable fluid flow rates. Furthermore, at both sites, a dominance of ANME-2 archaea accompanied by their bacterial partners is inferred based on lipid biomarker distributions and carbon isotope signatures, which is in agreement with recently published DNA analyses for the G11 pockmark. However, the present data reveal high discrepancies in the contents and δ¹³C values for both archaeal and bacterial lipid profiles, implying the possible involvement of at least two distinct AOM-related microbial consortia at the inferred AOM depth zonation of G11 and G12 pockmark sediments. In both sediment cores, the δ¹³C profiles for most archaeal lipids suggest a direct assimilation of dissolved inorganic carbon (DIC) in addition to methane by ANMEs (chemoautotrophy); constant and highly depleted δ¹³C profiles for PMI:3, an archaeal lipid biomarker presumably related to ANME-2, suggest a direct assimilation of ¹³C-depleted methane-derived carbon via AOM (methanotrophy). Evidently, the common approach of investigating lipid biomarker contents and δ¹³C signatures in cold seep sediments does not suffice to precisely discriminate between the carbon assimilation mode for each ANME archaeal group and associated bacteria. Rather, this needs to be combined with further specific labelling studies including different carbon sources (methane carbon, methane-derived organic intermediates and DIC) in order to unravel the metabolic pathways of each microbial consortium involved in AOM (ANME-1 vs. ANME-2 vs. ANME-3 archaeal group and associated bacteria).     

The impact of organic fluids on the carbon isotopic compositions of carbonate-rich reservoirs: Case study of the Lucaogou Formation in the Jimusaer Sag,Junggar Basin,NW China

The processes involved in the interaction between organic fluids and carbonates, and the resulting effect on reservoir quality during the evolution and maturation of organic matter remain unclear despite the fact that these processes influence the carbon and oxygen isotopic compositions of carbonates. Here, we provide new insights into these processes using data obtained from a detailed analysis of a mixed dolomitic–clastic and organic-rich sedimentary sequence within the middle Permian Lucaogou Formation in the Junggar Basin of NW China. The techniques used during this study include drillcore observations, thin section petrography, scanning electron microscopy (SEM) and electron probe microanalysis, and carbon and oxygen isotope analyses. Oil grades and total organic carbon (TOC) contents represent the amount of oil charging and the abundance of organic fluids within a reservoir, respectively, and both negatively correlate with the whole-rock δ¹³C and δ¹⁸O of the carbonates in the study area, indicating that organic fluids have affected the reservoir rocks. Secondary carbonates, including sparry calcite and dolomite overgrowths and cements, are common within the Lucaogou Formation. Well-developed sparry calcite is present within dark mudstone whereas the other two forms of secondary carbonates are present within the dolomite-rich reservoir rocks in this formation. Comparing thin section petrology with δ¹³C compositions suggests that the carbon isotopic composition of matrix carbonates varies little over small distances within a given horizon but varies significantly with stratigraphic height as a result of the development of secondary carbonates. The net change in whole-rock δ¹³C as a result of these secondary carbonates ranges from 1.8‰ to 4.6‰, with the secondary carbonates having calculated δ¹³C compositions from −18.6‰ to −8.5‰ that are indicative of an organic origin. The positive correlation between the concentration of Fe within matrix and secondary carbonates within one of the samples suggests that the diagenetic system within the Lucaogou Formation was relatively closed. The correlation between δ¹³C and δ¹⁸O in carbonates is commonly thought to be strengthened by the influence of meteoric water as well as organic fluids. However, good initial correlation between δ¹³C and δ¹⁸O of whole rock carbonates within the Lucaogou Formation (resulted from the evaporitic sedimentary environment) was reduced by organic fluids to some extent. Consequently, the δ¹³C–δ¹⁸O covariations within these sediments are not always reliable indicators of diagenetic alteration by organic fluids or meteoric water.The characteristics and δ¹³C compositions of the sparry calcite within the formation is indicative of a genetic relationship with organic acids as a result of the addition of organic CO₂ to the reservoir. Further analysis suggests that both carbonate and feldspar were dissolved by interaction with organic CO₂. However, dissolved carbonate reprecipitated as secondary carbonates, meaning that the interaction between organic fluids and dolomites did not directly improve reservoir quality, although this process did enhance the dissolution of feldspar and increase porosity. This indicates that the δ¹³C and δ¹⁸O of secondary carbonates and their influence on whole-rock carbonate isotopic values can be used to geochemically identify the effect of organic fluids on closed carbonate-rich reservoir systems.     

First biomarker evidence for methane oxidation at cold seeps in the Southeast Atlantic (REGAB pockmark)

Sediment cores from the REGAB pockmark, an active cold seep area in the southeast Atlantic, were analysed for their lipid biomarker distribution and associated stable carbon isotopic composition. Substantial amounts of diagnostic archaeal lipids were found, consisting mainly of archaeol, sn-2 hydroxyarchaeol and crocetane. All archaeal lipids were profoundly depleted in ¹³C with δ¹³C values as low as −133‰. Concurrently, abundant monoalkylglycerolethers (MAGE), assigned to sulphate-reducing bacteria, were identified and showed strong ¹³C-depletions (δ¹³C between −86‰ and −95‰). The structural and isotopic patterns of these microbial lipids provided compelling evidence for anaerobic oxidation of methane (AOM) occurring in REGAB sediments, mediated by archaea and sulphate reducing bacteria. Lipid fingerprints indicated that anaerobic methanotrophic archaea (ANME-2) and sulphate-reducing bacteria from the Desulfosarcina/Desulfococcus cluster are the dominant AOM assemblages. Depth profiles implied that highest AOM takes place below the upper 2 cm, mainly in the 6–12 cm depth interval. Significant abundances of ¹³C-depleted diploptene and 4α-methylsterols were found as well, inferring that aerobic methanotrophy occurs in the surface sediment interval. This first biomarker study at the recently investigated cold seeps in the SE Atlantic expand on existing work on AOM settings and add new evidence for aerobic and anaerobic methanotrophic communities occurring in close vicinity.     

Host‐dependent differences in resource use associated with Anilocra spp. parasitism in two coral reef fishes,as revealed by stable carbon and nitrogen isotope analyses

The role of parasites in trophic ecology is poorly understood in marine ecosystems. Stable isotope analyses (SIA) have been widely used in studies of trophic ecology, but have rarely been applied to study the role of parasites. Considering that some parasites are associated with altered host foraging patterns, SIA can help elucidate whether parasitism influences host trophic interactions. French grunt (Haemulon flavolineatum), an abundant Caribbean coral reef fish, contributes greatly to trophic connectivity. They typically depart the reef at dusk, feed overnight in seagrass beds, and return to the reef at dawn. The large parasitic isopod Anilocra haemuli commonly infects French grunt, and infected fish are less likely to complete their diel migration, and are in poorer condition than uninfected conspecifics. Brown chromis (Chromis multilineata) are diurnally feeding planktivores and infection by Anilocra chromis does not influence host condition. To determine if Anilocra infection influences host diet and foraging locality, we conducted stable carbon and nitrogen isotope analyses on scale, muscle, heart and gill tissues of infected and uninfected French grunt and brown chromis. We determined that all French grunt had δ¹³C values representative of seagrass habitats, but infected French grunt were significantly enriched in ¹³C and ¹⁵N compared to uninfected conspecifics. This suggests that compared to uninfected conspecifics, infected French grunt forage in seagrass, but on isotopically enriched prey, and/or are in poorer condition, which can elevate δ¹³C and δ¹⁵N values. For brown chromis, infection did not significantly influence any δ¹³C and δ¹⁵N values; hence they all foraged in the same environment and on similar prey. This is the first study to use SIA to examine differences in resource use by Caribbean coral reef fishes associated with parasitism and to evaluate how closely related parasites might have host‐dependent effects on host trophic ecology.     

Facies evolution and stratigraphic correlation in the early Oligocene Tard Clay of Hungary as revealed by maceral,biomarker and stable isotope composition

Hydrocarbon source rocks (i.e. Tard Clay Formation), containing type-II organic matter, were deposited in the Hungarian Paleogene Basin during Lower Oligocene. A major contribution of aquatic organisms (green algae, dinoflagellates, Chrysophyte algae) and minor inputs from macrophytes and land plants to organic matter accumulation is indicated by n-alkane distribution patterns, composition of steroids, and δ¹³C of hydrocarbon biomarkers. Microbial communities included heterotrophic bacteria, cyanobacteria, chemoautotrophic bacteria, as well as green sulphur bacteria. The presence of methanotrophic bacteria is indicated by ¹³C-depleted hop-17(21)-ene. Higher inputs of terrestrial organic matter occurred during deposition of the lower and uppermost units of the Tard Clay Formation. The terpenoid hydrocarbon composition argues for angiosperm-dominated vegetation in the area of the Hungarian Paleogene Basin. Diterpenoid hydrocarbons, derived from the resins of conifers, are about 2–3‰ enriched in ¹³C compared to the angiosperm biomarkers.Environmental conditions changed from marine to brackish, accompanied by oxygen-depletion in the lower parts of the water column. Organic carbon accumulation during this period was a consequence of stagnant bottom water conditions in the Hungarian Paleogene Basin due to salinity stratification. This is indicated by low pristane/phytane ratios (varying from 0.27 to 1.44), enhanced ratios of dimethylated versus trimethylated MTTCs (0.14–0.59), and the presence of aryl isoprenoids (from 0.4 to 14.1 μg/g TOC). A major marine incursion is evidenced by stable isotope ratios of organic matter and carbonates. In the uppermost member of the Tard Clay, a transition from brackish towards normal marine conditions is proposed.Up to 3 anoxic cycles are recognized in the drill core sections, separated by minima in pristane/phytane ratios and maxima in the depth trends of di-/tri-methylated MTTCs and aryl isoprenoid concentrations. In combination with the position of maxima of δ¹³C of carbonate and organic matter and an abrupt decrease in perylene concentrations, the cycles can be used for intra-formational correlation of the Tard Clay.     

Size‐based differences in isotopic niche width (δ13C and δ15N) of green turtles (Chelonia mydas) nesting on Príncipe Island,Gulf of Guinea

Within the same population, nesting green turtles (Chelonia mydas) might exploit different niches by exhibiting polymorphic foraging strategies and/or inhabiting geographically distinct foraging areas. This is crucial information for the conservation of this species. Here, we used stable carbon and nitrogen isotope ratios (δ¹³C and δ¹⁵N) to test for differences in a population of green turtles nesting on Príncipe Island (1°37′N; 7°24?′E), Central Africa. A total of 60 nesting females were sampled on the two main nesting beaches of the island in December 2012. Minimum curved carapace length (CCL) was recorded, and δ¹³C and δ¹⁵N values were measured in the epidermis of each individual. Overall, CCL varied from 87.0 to 108.0 cm (mean ± SD =100.0 ± 5.1), δ¹³C values from ?19.4 to ?8.6‰ (?17.3 ± 1.8) and δ¹⁵N values from 7.9 to 17.3‰ (13.6 ± 1.5). Despite the large variation in both isotopic ratios, their distributions were unimodal, showing an absence of polymorphic foraging strategies and isotopically distinct foraging areas. However, smaller females (< median, 100.8 cm) occupied a much larger isotopic niche (i.e., four times greater) than larger females. These results suggest that nesting green turtles may forage opportunistically on the resources available in each of their foraging home ranges, with smaller females venturing to more isotopic‐diversified areas and/or exhibiting broader foraging strategies than larger females. In addition, and in accordance with other studies, findings suggest that the foraging grounds used by the Príncipe green turtle nesting females are distributed mainly throughout the Gulf of Guinea.     

Isotopic and Elemental Variations of Carbon and Nitrogen in a Mangrove Estuary

Variations in elemental and isotopic ratios of suspended particulate matter (SPM) were investigated in the Guayas River Estuary Ecosystem (GREE) that empties into the Gulf of Guayaquil, Ecuador. Detritus in the system was identified on the basis of extremely high carbon:chlorophyll aratios (>1000). This material had mean δ¹³C of −26·4±0·3, δ¹⁵N of +4·8±0·2, and (C:N)_atomicof 14·1±0·9. The isotopic data were comparable to measurements reported for fresh and degrading mangrove leaves, whereas the elemental ratio was comparatively enriched in nitrogen. Isotope measurements of SPM throughout the GREE were more similar to values for riverine material and detritus compared with that for the coastal end-member. Values indicative ofin situproduced algae, sewage and shrimp pond effluent were only found at selected sites. Bacterial bioassays, which were used to document potential sources of dissolved organic matter in the GREE, were isotopically similar to SPM. This correspondence coupled with the relatively low (C:N)_aof SPM could be explained by bacterial immobolization of nitrogen onto detritus. Finally, tidal variations of (C:N)_aand δ¹³C at a brackish mangrove site were similar in magnitude to spatial variations encountered throughout the GREE. Based on these results, the authors caution that care must be taken when samples are taken for food-web studies in these systems.     

Meso-scale variability of coastal suprabenthic communities in the southern Tyrrhenian Sea (western Mediterranean)

Meso-scale spatial variability of coastal suprabenthic communities inhabiting muddy bottoms at 50–80 m depth in three gulfs of northern Sicily (Western Mediterranean) was here investigated. Although similar as concerns the hydrological and oceanographic conditions, the three areas, that encompass a large portion of the continental shelf (135 km), are characterized by different geo-morphological features. In addition, they are subjected to different trawl fishery pressures. The Gulf of Castellammare is a semi-enclosed bay, where the trawling activity has been banned since 1990. The Gulf of Termini Imerese and the Gulf of Sant’Agata are open areas, subjected to high trawl fishing intensity. In terms of density, gammarid amphipods showed differences among the three gulfs; in terms of biomass, cumaceans and amphipods were more abundant in the Gulf of Castellammare than in the other two areas. Multivariate analyses provided evidence for separation of suprabenthic assemblages between the Gulf of Castellammare and the other two gulfs. The Gulf of Castellammare seemed to host the most diversified and stable community according to α- and β-diversity indices. In the same way the low value of δ¹³C vs. δ¹⁵N correlation found in the gulf of Castellammare, which evidences the occurrence of several food sources, supports the idea of a higher stability in the semi-enclosed, trawl-ban area. In the other two areas δ¹³C vs. δ¹⁵N correlations were high, suggesting the existence of a pelagic source sustaining the suprabenthic communities. This is also confirmed by the lower δ¹³C concentrations found in suprabenthic species. Taking into account the homogeneous oceanographic conditions among gulfs, other factors, such as geo-morphology and trawling pressure should be involved in the observed differences among the three areas in terms of assemblage structure, diversity, and trophodynamics of suprabenthic communities.     

Determination of phospholipid fatty acid structures and stable carbon isotope compositions of deep-sea sediments of the Northwest Pacific, ODP site 1179

Sediment samples ranging from 0.05 to 278 m below sea floor (mbsf) at a Northwest Pacific deep-water (5564 mbsl) site (ODP Leg 191, Site 1179) were analyzed for phospholipid fatty acids (PLFAs). Total PLFA concentrations decreased by a factor of three over the first meter of sediment and then decreased at a slower rate to approximately 30 mbsf. The sharp decrease over the first meter corresponds to the depth of nitrate and Mn(IV) reduction as indicated by pore water chemistry. PLFA-based cell numbers at site 1179 had a similar depth profile as that for Acridine orange direct cell counts previously made on ODP site 1149 sediments which have a similar water depth and lithology. The mole percentage of straight chain saturated PLFAs increases with depth, with a large shift between the 0.95 and 3.95 mbsf samples. PLFA stable carbon isotope ratios were determined for sediments from 0.05 to 4.53 mbsf and showed a general trend toward more depleted δ¹³C values with depth. Both of these observations may indicate a shift in the bacterial community with depth across the different redox zones inferred from pore water chemistry data. The PLFA 10me16:0, which has been attributed to the bacterial genera Desulfobacter in many marine sediments, showed the greatest isotopic depletion, decreasing from − 20 to − 35‰ over the first meter of sediment. Pore water chemistry suggested that sulfate reduction was absent or minimal over this same sediment interval. However, 10me16:0 has been shown to be produced by recently discovered anaerobic ammonium oxidizing (anammox) bacteria which are known chemoautotrophs. The increasing depletion in δ¹³C of 10me16:0 with the unusually lower concentration of ammonium and linear decrease of nitrate concentration is consistent with a scenario of anammox bacteria mediating the oxidation of ammonium via nitrite, an intermediate of nitrate reduction.     

Pyrosequencing reveals specific associations of bacterial clades Roseobacter and Flavobacterium with the harmful dinoflagellate Cochlodinium polykrikoides growing in culture

Harmful algal blooms of the dinoflagellate Cochlodinium polykrikoides are of worldwide environmental concern. Previous field studies have demonstrated the association of such algal blooms with free‐living bacteria (FLB) and particle‐associated bacteria (PAB). In the present study, we report evidence for bacterial association with C. polykrikoides in laboratory culture. Sampling was performed at different growth stages (lag, exponential and stationary) and pyrosequencing was used to identify taxa. As a result, the community structures of FLB and PAB were elucidated and significant differences between FLB and PAB were identified by hierarchical cluster analysis and the similarity profiles test (p = .05). The relative abundances of bacterial operational taxonomic units distinctly changed in response to the different phases of C. polykrikoides growth. The Roseobacter genus Marivita and the Flavobacterium genus Winogradskyella were dominant in the FLB and PAB associated with C. polykrikoides, respectively. The Roseobacter clade, which has also exhibited associations with C. polykrikoides blooms in field samples, may influence host cell growth through the provision of vitamins.     

Standing stocks and production rates of phytoplankton and abundance of bacteria in the Seto Inland Sea, Japan

Standing stocks and production rates of phytoplankton and abundance of bacteria were investigated at 39 stations in the Seto Inland Sea, Japan during four crulses in October 1993, January, April and June 1994. Primary productivity was measured by the¹³C tracer method. Photosynthetic rate varied from 0.41 to 32.1 μgC/1/h with an average value of 4.67 μgC/l/h. Annual primary production was estimated to be 218 gC/m²/year. Annual primary production in this study was 1.8 times as high as the values which were previously reported at same area. The reason for the disagreement between our primary production value and previous values is not thought to be due to the difference of methods used for measuring primary production or the different Chl.a concentrations but to the method of estimating the primary production in the euphotic zone from thein vitro measurements. The distribution of bacterial cells in surface seawater was examined during the same cruises. Bacterial cell density ranged from 0.32 to 3.4×10⁶ cells/ml. The density was relatively high in the eutrophic regions of Hiroshima Bay and Osaka Bay In addition, a high density of bacteria was also observed in an area within Suo Nada where Chl.a was relatively low. The disparity between Chla and bacterial density in Suo Nada suggests that bacterial abundance can be controlled by the availability of substrates other than phytoplankton exudate.     

Evidence for methane and hydrogen sulfide venting imprinted on a Quaternary eolianite from southern Israel

Two different and physically separated chemosynthetic communities of bacteria are responsible for the formation of the Beeri native sulfur deposit hosted in a Late Quaternary sandstone on the southern coastal plain of Israel. The enriched concentrations are distributed over an area of about 1 km², within a zone 2–3 m thick at 1–13 m below surface. Two hundred fifty meters below the sulfur deposit, sulfur-reducing bacteria, thriving on methane generated in Neogene marls, reduced the Messinian gypsum to generate hydrogen sulfide, which subaqueously vented together with methane into the siliciclastic Quaternary sequence. Another, different chemosynthetic community ofBeggiatoa-like and unidentified bacteria oxidized the hydrogen sulfide into native sulfur and secondary gypsum, alunite, and iron sulfates. The coupled chemical and bacterial processes attributed to the formation of the sulfur deposit at Beeri are strikingly similar to the processes occurring today in the context of submarine hydrocarbon vents associated with the salt diapirs in the Gulf of Mexico.     

A matter of tolerance: Distribution potential of scyphozoan polyps in a changing environment

Jellyfish blooms are unpredictable, unsustainable events, frequently affecting aquatic ecosystems severely. Of particular interest are the consequences of environmental change for jellyfish populations, especially in semi‐enclosed habitats. Regional and seasonal changes in water chemistry and physics may control the distribution of sessile polyps in the Baltic Sea, hence potentially driving the population dynamics of the two abundant medusa species Aurelia aurita and Cyanea capillata (Scyphozoa, Cnidaria). In laboratory experiments, settlement, growth, survival and physiological condition of A. aurita polyps were investigated at different levels of water temperature, pH and salinity. Survival and physiological condition of C. capillata polyps were examined after exposure to low salinity levels. Increased settlement of A. aurita planula larvae was observed on substrate plates at low temperature (4°C), low pH (7.4) and low salinity (7.5 psu), whereas early polyp growth was constrained by salinity ≤10 psu. Aurelia aurita polyps were in good physiological condition over the whole temperature range, while exposure to pH <6.5 led to stepwise tissue degradation. Salinity reduction to ≤5 and ≤8 psu caused irreversible degeneration of A. aurita and C. capillata polyps, respectively. Observed physiological limits suggest distribution of polyp populations of A. aurita in central and of C. capillata in western parts of the Baltic Sea, while future climate changes may particularly restrict occurrence of the less tolerant C. capillata.