Microbially mediated carbonate precipitation in a hypersaline lake,Big Pond (Eleuthera,Bahamas)

Microbial metabolism impacts the degree of carbonate saturation by changing the total alkalinity and calcium availability; this can result in the precipitation of carbonate minerals and thus the formation of microbialites. Here, the microbial metabolic activity, the characteristics and turnover of the extracellular polymeric substances and the physicochemical conditions in the water column and sediments of a hypersaline lake, Big Pond, Bahamas, were determined to identify the driving forces in microbialite formation. A conceptual model for organomineralization within the active part of the microbial mats that cover the lake sediments is presented. Geochemical modelling indicated an oversaturation with respect to carbonates (including calcite, aragonite and dolomite), but these minerals were never observed to precipitate at the mat–water interface. This failure is attributed to the capacity of the water column and upper layers of the microbial mat to bind calcium. A layer of high Mg‐calcite was present 4 to 6 mm below the surface of the mat, just beneath the horizons of maximum photosynthesis and aerobic respiration. This carbonate layer was associated with the zone of maximum sulphate reduction. It is postulated that extracellular polymeric substances and low molecular weight organic carbon produced at the surface (i.e. the cyanobacterial layer) of the mat bind calcium. Both aerobic and anaerobic heterotrophic microbes consume extracellular polymeric substances (each process accounting for approximately half of the total consumption) and low molecular weight organic carbon, liberating calcium and producing inorganic carbon. The combination of these geochemical changes can increase the carbonate saturation index, which may result in carbonate precipitation. In conclusion, the formation and degradation of extracellular polymeric substances, as well as sulphate reduction, may play a pivotal role in the formation of microbialites both in marine and hypersaline environments.     

The Permian–Triassic mass extinction: Ostracods (Crustacea) and microbialites

The end-Permian mass extinction (EPE), about 252 Myr ago, eradicated more than 90% of marine species. Following this event, microbial formations colonised the space left vacant after extinction of skeletonised metazoans. These post-extinction microbialites dominated shallow marine environments and were usually considered as devoid of associated fauna. Recently, several fossil groups were discovered together with these deposits and allow discussing the palaeoenvironmental conditions following the EPE. At the very base of the Triassic, abundant Ostracods (Crustacea) are systematically present, only in association with microbialites. Bacterial communities building the microbial mats should have served as an unlimited food supply. Photosynthetic cyanobacteria may also have locally provided oxygen to the supposedly anoxic environment: microbialites would have been refuges in the immediate aftermath of the EPE. Ostracods temporarily disappear together with microbialites during the Griesbachian.     

Authigenic replacement of cyanobacterially precipitated calcium carbonate by aluminium‐silicates in giant microbialites of Lake Van (Turkey)

Studies of modern cyanobacterial mats and biofilms show that they can precipitate minerals as a consequence of metabolic and degradational activities paired with ambient hydrochemical conditions. This study looked at modern microbial mats forming giant, tower‐like, groundwater‐fed, calcareous microbialites in the world's largest, highly alkaline lake; Van Gölü (Lake Van), East Turkey. Results show that microbial systems play a role not only in carbonate precipitation but also in the formation of siliceous mineral phases. Transmitted light microscopy, scanning electron microscopy and spectral observations revealed that, within the extracellular polymeric substances excreted by the mats abundant minute aragonite grains precipitated first in vivo. These minute grains were quickly succeeded and/or supplemented in the dead biomass of the cyanobacterial mat by authigenic Al–Mg–Fe siliceous phases. Silicon dioxide is available in large concentrations in the highly alkaline water of Lake Van. Divalent cations (Ca and Mg) are delivered to the microbialites mostly by groundwater springs. The precipitation of the fine‐grained siliceous phases is probably mediated by bacteria degrading the cyanobacterial biomass and complexing the excessive cations with their extracellular polymeric envelopes. The bacteria serve as nucleation centres for the subsequent precipitation of siliceous mineral phases. Generally, the biphasic (calcareous and siliceous) mineralization – characterizing Lake Van microbialites – is controlled by their interior highly dynamic hydrogeochemical situation. There, the dramatically different alkaline lake water and the Ca–Mg‐charged groundwater mix at various rates. The early diagenetic replacement of the in vivo aragonite by authigenic siliceous phases significantly increases the fossilization potential of the mat‐forming cyanobacteria. Lake Van and its giant microbialite tufa towers act as a model explaining the transformation of early diagenetic mineral phases observed in many modern and ancient carbonate marine deposits, particularly those influenced by diffusion of silica‐enriched and metal‐enriched pore waters from below the water–sediment interface.     

External controls on the distribution,fabrics and mineralization of modern microbial mats in a coastal hypersaline lagoon,Cayo Coco (Cuba)

Active, carbonate‐mineralizing microbial mats flourish in a tropical, highly evaporative, marine‐fed lagoonal network to the south of Cayo Coco Island (Cuba). Hypersaline conditions support the development of a complex sedimentary microbial ecosystem with diverse morphologies, a variable intensity of mineralization and a potential for preservation. In this study, the role of intrinsic (i.e. microbial) and extrinsic (i.e. physicochemical) controls on microbial mat development, mineralization and preservation was investigated. The network consists of lagoons, forming in the interdune depressions of a Pleistocene aeolian substratum; they developed due to a progressive increase in sea‐level since the Holocene. The hydrological budget in the Cayo Coco lagoonal network changes from west to east, increasing the salinity. This change progressively excludes grazers and increases the saturation index of carbonate minerals, favouring the development and mineralization of microbial mats in the easternmost lagoons. Detailed mapping of the easternmost lagoon shows four zones with different flooding regimes. The microbial activity in the mats was recorded using light–dark shifts in conjunction with microelectrode O₂ and HS^? profiles. High rates of O₂ production and consumption, in addition to substantial amounts of exopolymeric substances, are indicative of a potentially strong intrinsic control on mineralization. Seasonal, climate‐driven water fluctuations are key for mat development, mineralization, morphology and distribution. Microbial mats show no mineralization in the permanently submersed zone, and moderate mineralization in zones with alternating immersion and exposure. It is suggested that mineralization is also driven by water‐level fluctuations and evaporation. Mineralized mats are laminated and consist of alternating trapping and binding of grains and microbially induced magnesium calcite and dolomite precipitation. The macrofabrics of the mats evolve from early colonizing Flat mats to complex Cerebroid or Terrace structures. The macrofabrics are influenced by the hydrodynamic regime: wind‐driven waves inducing relief terraces in windward areas and flat morphologies on the leeward side of the lagoon. Other external drivers include: (i) storm events that either promote (for example, by bioclasts covering) or prevent (for example, by causing erosion) microbial mat preservation; and (ii) subsurface degassing, through mangrove roots and desiccation cracks covered by Flat mats (i.e. forming Hemispheroids and Cerebroidal structures). These findings provide in‐depth insights into understanding fossil microbialite morphologies that formed in lagoonal settings.     

World's largest known Precambrian fossil black smoker chimneys and associated microbial vent communities, North China: Implications for early life

Black smoker chimneys and biological vent communities have been identified at many sites on the deep seafloor, particularly along oceanic spreading centers. We report the largest and oldest known, microbe-rich sub-meter-sized black smoker chimneys and mounds from a 1.43 billion-year old sulfide deposit in a continental graben in northern China. These chimneys are especially well preserved, with characteristic morphology, internal textures and internal cylindrical mineralogical zonation. Four main types of chimneys are distinguished on textural and mineralogical criteria, exhibiting either Zn–Fe-sulfide or Pb–Zn–Fe-sulfide internal cylindrical mineralogical zones. The chimneys mark vent sites in submarine grabens indicating focused flow-venting processes. The fossil chimneys have mineralogical and geological evolutionary features similar to their counterparts on the modern seafloor and other submarine hydrothermal vents. Black smoker vent fluids and seafloor tectonism played important roles for formation of the massive sulfide deposits in the Mesoproterozoic.We also report the first known, remarkably diverse assemblage of fossil microbialites from around and inside Precambrian vent chimneys, demonstrating that Proterozoic life flourished around submarine hot vents and deep within the chimney vent passages. Filamentous, spherical, rod, and coccus-shaped fossil microbes are preserved preferentially on sulfide precipitates. Based on the depth and setting of the fossil biota, the organisms that produced the microbialites were likely sulfate-reducing chemosynthetic and thermophyllic microbes. Textural and mineralogical evidence shows that biomineralization processes enhanced chimney growth and sulfide precipitation.Close association of microorganisms with sulfide chimneys in modern deep-sea hydrothermal vents and younger ophiolites has sparked speculation about whether life may have originated at similar vents. However, little is known about fossil equivalents of vent microfossils and black smoker chimneys from Earth's early evolution. The fossilized microorganisms from the Gaobanhe black smoker chimney sulfide deposits include thread-like filaments with branching and twisted forms and preserved organic carbon, representing fossilized remnants of microbial mats metabolized at high temperatures characteristic of venting fluids. The preservation of fossil microorganisms provides evidence that microbial populations were closely associated with black smoker chimneys in Earth's early history. The microbial population clearly constitutes the site for mediating mineral formation. These ancient microbial fossils lead to a much better understanding of early life on the deep seafloor. The discovery of the Mesoproterozoic microfossils within black-smoker hydrothermal chimneys indicates that hydrothermal activity around sea-floor vents supported dense microbial communities, and supports speculation that vent sites may have hosted the origin of life.     

Microbial deposits in the aftermath of the end‐Permian mass extinction: A diverging case from the Mineral Mountains (Utah,USA)

The Lower Triassic Mineral Mountains area (Utah, USA) preserves diversified Smithian and Spathian reefs and bioaccumulations that contain fenestral‐microbialites and various benthic and pelagic organisms. Ecological and environmental changes during the Early Triassic are commonly assumed to be associated with numerous perturbations (productivity changes, acidifica‐tion, redox changes, hypercapnia, eustatism and temperature changes) post‐dating the Permian–Triassic mass extinction. New data acquired in the Mineral Mountains sediments provide evidence to decipher the relationships between depositional environments and the growth and distribution of microbial structures. These data also help to understand better the controlling factors acting upon sedimentation and community turnovers through the Smithian–early Spathian. The studied section records a large‐scale depositional sequence during the Dienerian(?)–Spathian interval. During the transgression, depositional environments evolved from a coastal bay with continental deposits to intertidal fenestral–microbial limestones, shallow subtidal marine sponge–microbial reefs to deep subtidal mud‐dominated limestones. Storm‐induced deposits, microbialite–sponge reefs and shallow subtidal deposits indicate the regression. Three microbialite associations occur in ascending order: (i) a red beds microbialite association deposited in low‐energy hypersaline supratidal conditions where microbialites consist of microbial mats and poorly preserved microbially induced sedimentary structure; (ii) a Smithian microbialite association formed in moderate to high‐energy, tidal conditions where microbialites include stromatolites and associated carbonate grains (oncoids, ooids and peloids); and (iii) a Spathian microbialite association developed in low‐energy offshore conditions that is preserved as multiple decimetre thick isolated domes and coalescent domes. Data indicate that the morphologies of the three microbialite associations are controlled primarily by accommodation, hydrodynamics, bathymetry and grain supply. This study suggests that microbial constructions are controlled by changes between trapping and binding versus precipitation processes in variable hydrodynamic conditions. Due to the presence of numerous metazoans associated with microbialites throughout the Smithian increase in accommodation and Spathian decrease in accommodation, the commonly assumed anachronistic character of the Early Triassic microbialites and the traditional view of prolonged deleterious conditions during the Early Triassic time interval is questioned.     

Seasonal Variability of Mineral Formation in Microbial Mats Subjected to Drying and Wetting Cycles in Alkaline and Hypersaline Sedimentary Environments

Interactions of the microbial mat community with the sedimentary environment were evaluated in two shallow, ephemeral lakes with markedly different hydrochemistry and mineralogy. The characterization of growing and decaying microbial mats by light microscopy observations and fluorescence in situ hybridization was complemented with biogeochemical and mineralogical measurements. The lakes studied were Eras and Altillo Chica, both located in Central Spain and representing poly-extreme environments. Lake Eras is a highly alkaline, brackish to saline lake containing a high concentration of chloride, and in which the carbonate concentration exceeds the sulfate concentration. The presence of magnesium is crucial for the precipitation of hydromagnesite in microbialites of this lake. Altillo Chica is a mesosaline to hypersaline playa lake with high concentrations of sulfate and chloride, favoring the formation of gypsum microbialites. Differences in the microbial community composition and mineralogy of the microbialites between the two lakes were primarily controlled by alkalinity and salinity. Lake Eras was dominated by the cyanobacterial genus Oscillatoria, as well as Alphaproteobacteria, Gammaproteobacteria and Firmicutes. When the mat decayed, Alphaproteobacteria and Deltaproteobacteria increased and became the dominant heterotrophs, as opposed to Firmicutes. In contrast, Deltaproteobacteria was the most abundant group in Lake Altillo Chica, where desiccation led to mats decay during evaporite formation. In addition to Deltaproteobacteria, Cyanobacteria, Actinobacteria, Alphaproteobacteria and Gammaproteobacteria were found in Altillo Chica, mostly during microbial mats growth. At both sites, microbial mats favored the precipitation of sulfate and carbonate minerals. The precipitation of carbonate is higher in the soda lake due to a stronger alkalinity engine and probably a higher degradation rate of exopolymeric substances. Our findings clarify the distribution patterns of microbial community composition in ephemeral lakes at the levels of whole communities, which were subjected to environmental conditions similar to those that may have existed during early Earth.     

Mass occurrence of benthic coccoid cyanobacteria and their role in the production of Neoarchean carbonates of South Africa

The sparse Archean fossil record is based almost entirely on carbonaceous remnants of microorganisms cellularly preserved due to their early post-mortem silicification. Hitherto as an exception, sedimentary carbonate rocks from the Neoarchean Nauga Formation of South Africa contain calcified microbial mats composed of microbiota closely resembling modern benthic colonial cyanobacteria (Chroococcales and Pleurocapsales). Their remains, visible under the scanning electron microscope (SEM) after etching of polished rock samples, comprise capsular envelopes, mucilage sheaths, and groups of cells mineralized by calcium carbonate with an admixture of Al–K–Mg–Fe silicates. The capsular organization of the mucilaginous sheaths surrounding individual cells and cell clusters forming colonies and the mode of mineralization are the characteristic common features of the Neoarchean microbiota described and their modern analogues. The new findings indicate massive production of calcium carbonates by benthic coccoid cyanobacteria in the Neoarchean, and offer a solution to the problem of the origin of Archean carbonate platforms, stromatolites and microbial reefs.     

Microbe–mineral interactions: early carbonate precipitation in a hypersaline lake (Eleuthera Island, Bahamas)

Microbialites (benthic microbial carbonate deposits) were discovered in a hypersaline alkaline lake on Eleuthera Island (Bahamas). From the edge towards the centre of the lake, four main zones of precipitation could be distinguished: (1) millimetre‐sized clumps of Mg‐calcite on a thin microbial mat; (2) thicker and continuous carbonate crusts with columnar morphologies; (3) isolated patches of carbonate crust separated by a dark non‐calcified gelatinous mat; and (4) a dark microbial mat without precipitation. In thin section, the precipitate displayed a micropeloidal structure characterized by micritic micropeloids (strong autofluorescence) surrounded by microspar and spar cement (no fluorescence). Observations using scanning electron microscopy (SEM) equipped with a cryotransfer system indicate that micrite nucleation is initiated within a polymer biofilm that embeds microbial communities. These extracellular polymeric substances (EPS) are progressively replaced with high‐Mg calcite. Discontinuous EPS calcification generates a micropeloidal structure of the micrite, possibly resulting from the presence of clusters of coccoid or remnants of filamentous bacteria. At high magnification, the microstructure of the initial precipitate consists of 200–500 nm spheres. No precipitation is observed in or on the sheaths of cyanobacteria, and only a negligible amount of precipitation is directly associated with the well‐organized and active filamentous cyanobacteria (in deeper layers of the mat), indicating that carbonate precipitation is not associated with CO₂ uptake during photosynthesis. Instead, the precipitation occurs at the uppermost layer of the mat, which is composed of EPS, empty filamentous bacteria and coccoids (Gloeocapsa spp.). Two‐dimensional mapping of sulphate reduction shows high activity in close association with the carbonate precipitate at the top of the microbial mat. In combination, these findings suggest that net precipitation of calcium carbonate results from a temporal and spatial decoupling of the various microbial metabolic processes responsible for CaCO₃ precipitation and dissolution. Theoretically, partial degradation of EPS by aerobic heterotrophs or UV fuels sulphate‐reducing activity, which increases alkalinity in microdomains, inducing CaCO₃ precipitation. This degradation could also be responsible for EPS decarboxylation, which eliminates Ca²⁺‐binding capacity of the EPS and releases Ca²⁺ ions that were originally bound by carboxyl groups. At the end of these processes, the EPS biofilm is calcified and exhibits a micritic micropeloidal structure. The EPS‐free precipitate subsequently serves as a substrate for physico‐chemical precipitation of spar cement from the alkaline water of the lake. The micropeloidal structure has an intimate mixture of micrite and microspar comparable to microstructures of some fossil microbialites.     

华北地台马沟剖面寒武系苗岭统微生物岩的组构特征、沉积环境和地质意义

华北地台大约从寒武纪第二世的晚期开始接受沉积,超覆在前寒武-寒武纪“巨型不整合面”之上,形成了一套二级海侵背景下的厚层陆表海硅质碎屑岩-碳酸盐岩混积序列,这套特别的地层序列在苗岭统和芙蓉统中包含了多种多样的微生物岩。研究区苗岭统出露较为完整,包括毛庄组、徐庄组、张夏组和崮山组,分别构成4个三级层序即SQ1至SQ4。在SQ2的高位体系域和强迫型海退体系域中,以及SQ3的高位体系域中发育了较为特别的由微生物岩构成的生物层、生物丘或生物丘复合体。微生物岩的种类和沉积环境包括形成于正常浪基面以下、潮下带低能环境的类型I迷宫状微生物岩,潮下带上部至潮间带中-高能环境的类型II和类型III迷宫状微生物岩,风暴浪基面之上浅水环境中的均一石,潮间带短柱状叠层石和潮上带近水平缓波状叠层石,以及高能鲕粒滩中的小型叠层石生物丘。通常认为寒武系苗岭统的微生物岩（礁）以凝块石和树形石为特征,而本次研究在苗岭统中发现了迷宫状微生物岩和均一石,补充丰富了对寒武系微生物岩（礁）多样化和复杂化构成的认识。无论是在迷宫状微生物岩、均一石中,还是叠层石中,都见到了一种或多种钙化蓝细菌（鞘）化石,如葛万菌（Girvanella）、附枝菌（Epithyton）和基座菌（Hedstroemia）等,以及大量的钙化微生物席残余物,表明这些微生物岩是由蓝细菌所主导的微生物席的复杂的钙化作用产物,而大量呈弥散状分布的黄铁矿晶体或颗粒则表明硫酸盐还原菌等非光合作用细菌和异养细菌可能在促进碳酸盐沉淀过程中扮演了重要角色。     

Characterization of the Microbial Dolomite of the Upper Sinian Dengying Formation in the Hanyuan Area of Sichuan Province, China

The algal dolostone of the Upper Sinian Dengying Formation (corresponding to the Ediacaran system) in the Upper Yangtze Platform of China possesses a rich diversity of microorganisms and is an ideal site for the study of ancient microbial dolomite. We focused on algal dolostone and its microbial dolomite in the Hanyuan area of Sichuan Province, China. The macroscopic petrological features, microscopic morphology, texture characteristics of the fossil microorganisms and microbial dolomite, and geochemical characteristics were investigated. We found rich fossil microorganisms and microbial dolomites in the laminated, stromatolithic, uniform and clotted (algal) dolostones. The microorganisms present were mainly body fossils of cyanobacteria (including Renalcis, Girvanella, Nanococcus, and Epiphyton) and their trace fossils (including microbial mats (biofilms), algal traces, and spots). In addition, there was evidence of sulfate-reducing bacteria (SRB), moderately halophilic aerobic bacteria, and red algae. The microbial dolomites presented cryptocrystalline textures under polarizing microscope and nanometer-sized granular (including spherulitic and pene-cubical granular) and (sub) micron-sized sheet-like, irregular, spherical and ovoidal morphologies under scanning electron microscope (SEM). The microbial dolomites were formed by microbially induced mineralization in the intertidal zone and lagoon environments during the depositional and syngenetic stages and microbially influenced mineralization in the supratidal zone environment during the penecontemporaneous stage. The microbial metabolic activities and extracellular polymeric substances (EPS) determined the morphology and element composition of microbial dolomite. During the depositional and syngenetic stages, the metabolic activities of cyanobacteria and SRB were active and EPS, biofilms and microbial mats were well-developed. EPS provided a large number of nucleation sites. Accordingly, many nanometer-sized pene-cubical granular and (sub) micron-sized sheet-like microbial dolomites were formed. During the penecontemporaneous stage, SBR, cyanobacteria, and moderately halophilic aerobic bacteria were inactive. Furthermore, nucleation sites reduced significantly and were derived from both the EPS of surviving microorganisms and un-hydrolyzed EPS from dead microorganisms. Consequently the microbial dolomites present nanometer-sized spherulitic and micron-sized irregular, spherical, and ovoidal morphologies. Overall, the microbial dolomites evolved from nanometer-sized granular (including spherulitic and pene-cubical granular) dolomites to (sub) micron-sized sheet-like, irregular, spherical and ovoidal dolomites, and then to macroscopic laminated, stromatolithic, uniform, and clotted dolostones. These findings reveal the correlation between morphological evolution of microbial dolomite and microbial activities showing the complexity and diversity of mineral (dolomite)-microbe interactions, and providing new insight into microbial biomineralization and microbial dolomite in the Precambrian era.     

Carbonate precipitation in the alkaline lake Specchio di Venere (Pantelleria Island,Italy) and the possible role of microbial mats

Alkaline lakes like the hydrothermally affected lake Specchio di Venere (Pantelleria Island, Central Mediterranean) are typical geological settings harbouring calcified microbial mats. The present work is focused on the discrimination between biotic and abiotic processes driving carbonate precipitation in this lake, using hydrochemical, mineralogical and isotopic data. Hydrochemical analyses demonstrate that the lake is nearly 10−fold supersaturated with regard to aragonite and seasonally reaches hydromagnesite supersaturation. Microscopic observations depict organosedimentary laminated structures consisting of microbial communities and aragonitic precipitates, which are rather disseminated in pores than directly linked to microorganisms. Oxygen isotopic data indicate that authigenic carbonate crystallisation from evaporating water is the dominant precipitation process, further suggested by the absence of textural evidence of diagenetic processes. Conversely, the observed δ¹³C values reflect an influence of extracellular polymeric substances (EPS) on carbon fractionation during the precipitation process, due to the selective sequestration of ¹²C in the biomass. The above considerations suggest that at lake Specchio di Venere the carbonate precipitation is mainly of inorganic nature, but a minor role played by biologically influenced processes in microbial mats is not excluded.     

Clay mineralogical studies on Bijawars of the Sonrai basin: Palaeoenvironmental implications and inferences on the uranium mineralization

Clays associated with the Precambrian unconformity-related (sensu lato) uranium mineralization that occur along fractures of Rohini carbonate, Bandai sandstone and clay-organic rich black carbonaceous Gorakalan shale of the Sonrai Formation from Bijawar Group is significant. Nature and structural complexity of these clays have been studied to understand depositional mechanism and palaeoenvironmental conditions responsible for the restricted enrichment of uranium in the Sonrai basin. Clays (<2 μm fraction) separated from indurate sedimentary rocks by disaggregation, chemical treatment and centrifugation were examined using X-ray Diffraction (XRD) and Scanning Electron Microscopy (SEM). Presence of tv-1M type illite is inferred from the Rohini and Bandai Members of the Sonrai Formation, indicative of high fluid/rock interaction and super-saturation state of the fluids available in proximity with the uranium mineralization. It is observed that the Sonrai Formation is characterized by kaolinite > chlorite > illite > smectite mineral assemblages, whereas, Solda Formation contains kaolinite > illite > chlorite clays. It has been found that the former mineral assemblage resulted from the alteration process is associated with the uranium mineralization and follow progressive reaction series, indicating palaeoenvironmental (cycles of tropical humid to semi-arid/arid) changes prevailed during maturation of the Sonrai basin. The hydrothermal activity possibly associated with Kurrat volcanics is accountable for the clay mineral alterations.     

Structural diversity of biogenic carbonate particles in microbial mats

Non-skeletal carbonate particles in microbial mats were studied using thin sections and scanning electron microscopy. The microbial mats form biolaminated units (so-called potential stromatolites) in salterns. This study emphasizes the coexistence of different particle forms and makes a genetic connection between the heterogeneity of the organic substrate built by bacteria and diatoms and their extracellular polymeric substances (EPS). Whereas allochthonous particles are scarce, Lanzarote microbial mats provide various autochthonous surfaces for the attachment of cells and EPS, including sheaths and capsules of cyanobacteria, frustules of diatoms, metabolic products such as gas bubbles, liquid globules and faecal pellets, as well as the carbonate precipitates themselves. Morphologically different carbonate precipitates are: (i) calcified organic clumps (peloids), (ii) particles composed of concentric aragonite and biofilm laminae (ooids and oncoids), (hi) isolated particles floating in gel-supported mats and coated by rims of fibrous cement (cortoids), (iv) particles bound by cryptocrystalline matrices or cement, resulting in aggregate grains and (v) lobate cement which fills out spaces and pores and fixes the particles. Peloids are suggested to represent faecal pellets although microbial systems also generate cell clumps by non-faecal processes. Ooid and oncoid constructions clearly record alternating processes of biofilm accumulation and aragonite encrustation. Further characteristic features of carbonate particles generated within a microbial mat are: (i) an irregular distribution ranging from isolated particles floating within the gel-like matrix to closely packed particles, (ii) the amalgamation of different particle types (e.g. peloids and ooids) in aggregate grains, (iii) the heterogeneous nature of nuclei comprising bacterial clumps, intraclasts, individual cells, cell colonies and bubbles, (iv) the enrichment of remains, casts and imprints of cells within precipitates and (v) deformation (e.g. truncated cortices) of particles.     

Microbial Mats As a Source of Carbonate Sediments in the Late Precambrian: Evidence from the Linok Formation, the Middle Riphean of the Turukhansk Uplift, Siberia

The Linok Formation is made up of clayey and carbonate strata, 180–300 m thick, formed at the terminal Middle Riphean on the northwestern margin of the Siberian Platform. In the modern structure, it is exposed in the lower part of the Turukhansk Uplift section. The sediments accumulated in the distal part of the epiplatformal basin as a symmetrical transgressive–regressive cycle. Its lower part represents a deep-water basin environment with the mixed carbonate–clayey sedimentation, whereas the upper part reflects the origination and evolution of a carbonate platform. Microstructures discussed in this work suggest not only the ancient existence of benthic microbial assemblages (mats) but their active influence upon the facies pattern of sediments as well. The influence was determined by the ability of mat-forming communities to produce carbonate sediments under certain environmental conditions. The analysis of the facies succession suggested the absence of an appreciable influx of carbonate material to the basin from other sources. Based on the carbonate generation ability, one can distinguish three (carbonate-free, low-productive, and high-productive) groups of microbial communities. Groups 1 and 2 represent deep-water basin mats, whereas group 3 represents relatively shallow-water platformal microbial–mineral systems. The carbonate productivity of communities is inversely proportional to the depth of their dwelling and the relative rate of clayey sedimentation. The morphological reconstruction of microbiolite structures showed that the structures in basins and platforms greatly differed in terms of the size of elements. The ability of microbial communities to generate carbonate could be realized only within large ecosystems.     

Dolomite–silica stromatolites in Miocene lacustrine deposits from the Duero Basin, Spain: the role of organotemplates in the precipitation of dolomite

This research provides an ancient analogue for biologically mediated dolomite precipitation in microbial mats and biofilms, and describes the involvement of highly structured extracellular polymeric secretion (EPS) templates in dolomite nucleation. The structure of EPS is shown to match the hexagonal–trigonal lattice geometry of dolomite, which favoured the epitaxial crystallization of dolomite on the organic substrate. This structure of EPS also matches the arrangement of silica nanospheres in opal, which further accounts for the organically‐templated formation of opal enabling the non‐replacive co‐existence of dolomite and silica. The study is focused on a 50 m thick dolomite succession that is exposed in central areas of the Tertiary Duero Basin and was deposited in a mudflat‐saline lake sedimentary complex during the Middle to Late Miocene (9 to 15 Ma). In the intermediate intervals of the succession, poorly indurated dolomite beds pass gradually into silica beds. On the basis of sedimentological, compositional, geochemical and petrographic data, silica and dolomite beds have been interpreted as mineralized microbial mats. The silica beds formed in marginal areas of the lake in response to intense evaporative concentrations; this resulted in the rapid and early precipitation of opal. Silicification accounted for the exceptional preservation of the microbial mat structure, including biofilms, filamentous and coccoid microbes, and EPS. Extracellular polymeric secretions have a layered structure, each layer being composed of fibres which are arranged in accordance with a reticular pattern, with frequent intersection angles at 120° and 60°. Therefore, the structure of EPS matches the lattice geometry of dolomite and the arrangement of silica nanospheres in opal. Additionally, EPS binds different elements, with preference to Si and Mg. The concurrence of suitable composition and surface lattice morphologies in the EPS favoured the crystallization of dolomite on the substrate. In some cases, dolomite nucleation took place epicellularly on coccoid micro‐organisms, which gave way to spheroid crystals. Organic surfaces enable the inorganic mineral precipitation by lowering the free energy barrier to nucleation. Most of the microbial mats probably developed on the lake floor, under sub‐aqueous conditions, where the decomposition of organic matter took place. The subsequent formation of openly packed dolomite crystals, with inter‐related Si‐enriched fibrils throughout, is evidence for the pre‐existence of fibrillar structures in the mats. Miocene dolomite crystals are poorly ordered and non‐stoichiometric, with a slight Ca‐excess (up to 5%), which is indicative of the low diagenetic potential the microbial dolomite has towards a more ordered and stoichiometric structure; this confirms that microbial imprints can be preserved in the geological record, and validates their use as biosignatures.     

In the aftermath of the end‐Permian extinction: the microbialite refuge?

We present the first study of micro‐crustaceans (ostracods) associated with microbial crusts in the aftermath of the most devastating extinction, the end‐Permian extinction (EPE). These post‐extinction microbialites dominated shallow shelf marine environments and were traditionally considered as devoid of any associated fauna. We present a micro‐palaeontological analysis of a large record from microbial and non‐microbial settings following the EPE. This dataset documents the proliferation of ostracods strictly associated with microbialites. Based on the diet of extant ostracods and uniformitarianism, we propose that the abundant microbes in the mats served as an unlimited food supply. Photosynthetic cyanobacteria may also have locally provided oxygen under low oxygen conditions interpreted by others for the microbialites. Microbialites provided a specialised environment that may have acted as refuge for ostracods in the immediate aftermath of the EPE. The surviving faunas may have been progenitors for the starting of the latter radiation.     

The generation at hot springs of sedimentary ore deposits, microbialites and life

Notwithstanding the current fashion which favours an epigenetic origin for what used to be termed SEDEX deposits, there are several lines of evidence to indicate that Phanerozoic base-metal orebodies of this type have at least some exhalative aspects. The fossil polychaete worms, which occur in Lower Carboniferous pyrite mounds at Tynagh and Silvermines in Ireland, have affinities to Paralvinella, an organism that lives attached to hydrothermal chimneys at the Juan de Fuca hot spring site in the Northeast Pacific. In addition, fossil tube worms, and their moulds, occur both in silica masses underlying the Carboniferous giant Red Dog sulphide orebody in Alaska and in Devonian barite and base-metal deposits in North America and in Russia, respectively. The development of sulphide and carbonate fossil microbialites over exhalative centres further supports generation of some mineral deposits on sea or lake floors. Carbonate microbialite mounds are also developing today over warm springs and seepages.The existence of an environment in which sulphide mineralisation developed at the sea floor has implications also in a different sphere. Life itself may have emerged in a similar milieu at 4.2 Ga from iron monosulphide bubbles. A primitive metabolism could have been driven by the high, long-lived and constant, redox potential of 300 mV made available across an iron monosulphide membrane which would have been spontaneously generated where sulphide-bearing, submarine, alkaline springs issued into the acidic, iron-bearing, Hadean ocean. The alkaline spring provided bisulphide to the iron-rich (carbonic) acid ocean for the precipitation of iron-monosulphide bubbles (probotryoids), as well as acetate (Shock, 1992) — the feeder to the biochemical Krebs cycle, driven in reverse by the high partial pressure of CO₂. In addition to its scientific significance, an understanding of these beginnings may well benefit research into many aspects of economic geology.Even more extreme redox contrasts are revealed by the presence of sedimentary jasper or iron formation in three of the major Carboniferous sulphide orebodies in Ireland. Pyritic sulphide microbialites also grew over some of the associated fossil hot-spring sites and may be recognised by their bacteriogenic δ³⁴S values (−20 to −40‰). Recognition of such fossil hot-spring sites could lead to further discoveries of SEDEX deposits.     

叠层石中的海绿石化和黄铁矿化:以天津蓟县中元古界铁岭组为例*

作为微生物碳酸盐岩的主要类型之一,叠层石是微生物席的主要建造物已成为共识。天津蓟县中元古界铁岭组二段叠层石生物礁灰岩发育,其中的细粒叠层石被前人解释为微生物席捕获碳酸盐泥的微生物建造物,使得其既不同于现代叠层石,也不同于显生宙尤其是寒武纪的叠层石。更为特殊的是,这些叠层石中的海绿石和黄铁矿代表着2种特殊的矿化作用,其中研究区普遍产出的黄铁矿,作为硫酸盐还原细菌的产物,是了解古代微生物的窗口;而发育在高能浅海的海绿石,产出环境不同于现代海绿石,不能作为慢速沉积环境的指示矿物,亦不具有沉积间断的地质意义。2种矿化作用表明铁岭组叠层石是由沉淀作用而非捕获碳酸盐泥形成,这为了解中元古代叠层石的形成和特征提供了一些有益的线索。